| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_3130 |
|---|
| Symbol | |
|---|
| ID | 4114929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 3142169 |
|---|
| End bp | 3143236 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 638037897 |
|---|
| Product | 3-isopropylmalate dehydrogenase |
|---|
| Protein accession | YP_645849 |
|---|
| Protein GI | 108805912 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.462237 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGA GGTTTCGCGT ACTGCTTCTG CCCGGCGACG GCATAGGCCC GGAGGTGGTG
GCCGCCGCCC GGAGGGTGGC CGACGCCGCC GCGGCCCGCT TCGGCCTAAC CCTGGAGTAC
GAGGAGCGGA GGATAGGGGC CGCGGCCATC CGGGAGGAGG GGGCCCCCGT CTCGAAGGAG
ACCCTGCGGA GGGCGGGGGA GGCGGACGCC GTCCTGCTCG GGGCCGTGGG GGACCCGGAG
TTCGACGGCG GCGAGGTCCG GCCCGAGGCC GGGCTGCTCG CGCTGCGTCG GGAGCTCGGG
ACCTTCGCCA ACCTGCGCCC GGTGGCGGCC ATCCCGGCCC TCTCCGGCTC CTCCCCCCTG
AGGCCCGGGG TGGCGGAGGG GGTGGACCTG CTCATCGTCC GGGAGCTCAC CGGCGGGGCG
TACTTCGGGG AGAAGGAGGA GGGCGAGGAG AGGGCCAGCG ACCTCTCCGT GTACACCCGC
GGGGAGGTCG AGCGGGTGGC GAGGGTCGCC TTCGAGGCCG CGCGGGGGCG CAGGGGGAGG
GTCGCCTCCG TGGACAAGGC CAACGTGCTC GCCACCAGCC GGCTGTGGCG CCGGGTCGTC
GGGGAGGTGG CCCGGGACTA CCCGGACGTC GCGCTCGAGC ACGTGCTCGT GGACGCGGCG
GCGATGCACC TGGTCACCGA CCCGGGGCGC TTCGACGTGA TCCTCACGGA GAACCTCTTC
GGGGACATCC TCTCCGACGA GGCGGCGGTG CTGCCCGGCT CGATGGGGAT GCTGCCCAGC
GCCTCGCTGG GGGAGCCCGG CTCCCCCGGC ATCTTCGAGC CGGTGCACGG CAGCGCCCCG
GACATCGCCG GCAAGGGGGT GGCCAACCCC TACGCCGCCA TCCTCTCGGC GGCGATGATG
TTCCGCCACG GGCTGGGGCG GCCGGAGGCC GCGGAGGCCA TCGAGCGGGG GGTCGAGGCG
GCGGTGGCGG CCGGGTGCCT CACCCCCGAC CTGGGCGGGA GCAGCGGCAC GGAGGAGGCA
GCGGAGGCCG TGGCCCGCCG GGTGGCCGCG GAGGAGGGAG CGGCATGA
|
|---|
| Protein sequence | MSQRFRVLLL PGDGIGPEVV AAARRVADAA AARFGLTLEY EERRIGAAAI REEGAPVSKE
TLRRAGEADA VLLGAVGDPE FDGGEVRPEA GLLALRRELG TFANLRPVAA IPALSGSSPL
RPGVAEGVDL LIVRELTGGA YFGEKEEGEE RASDLSVYTR GEVERVARVA FEAARGRRGR
VASVDKANVL ATSRLWRRVV GEVARDYPDV ALEHVLVDAA AMHLVTDPGR FDVILTENLF
GDILSDEAAV LPGSMGMLPS ASLGEPGSPG IFEPVHGSAP DIAGKGVANP YAAILSAAMM
FRHGLGRPEA AEAIERGVEA AVAAGCLTPD LGGSSGTEEA AEAVARRVAA EEGAA
|
|---|
| |