Gene Rxyl_3128 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_3128 
Symbol 
ID4114927 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand+ 
Start bp3139325 
End bp3140281 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content69% 
IMG OID638037895 
Productbranched chain amino acid aminotransferase 
Protein accessionYP_645847 
Protein GI108805910 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 
TIGRFAM ID[TIGR01122] branched-chain amino acid aminotransferase, group I 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.499598 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGCGCA GCGGTTTCAC GGTCTCCGAG GCCGAGTGGT GCTACCACGA CGGCGAGTTC 
GTGCGGCTGG GGGAGGTGAG GCTCTCCCCC GCCACCCACG CCCTGAACTA CGGCACAGGG 
GTCTTCGAGG GCATAAGGGC CTACTGGAAC GCCGAGCGGC AGACCCTGCG GGTACTAAAG 
ATGCGCGAGC ACTACGAGCG CTTCGAGAAG AGCTGCCGGG TGCTGCACAT AGACCTCGGG 
CTCGGGGTGG ACGAGCTGTG CGAGATCACG CTGGAGATCC TGCGGCGCAA CGCCCCGCGG 
GAGGACACCT ACATCCGGCC GCTGGCGTAC AAGTCCGCGG AGTCGATCGG GGTGAAGCTG 
GACCTTCCGG CCTCGCTCTC CATCTTCACC ACCCCCATGG GCAACTACGT GGAGCTGACG 
GGGCTGCGGT GCTGCGTCTC CTCGTGGCGC AGGATCCCGG ACAACGCCAT GCCGGCGCGG 
GCCAAGCTCA CCGGCTCGTA CGTCAACACG GCGCTGGCGG TGGACGCCGC GCACCGGGCG 
GGCTACGACG AGGCGATCTT CCTCACCCAC GACGGCTTTG TCTCCGAGGC GAGCGCGGCC 
AACATCTTCC TGGTGCGCAA GGGCCGGCTC ATCACGCCGC CGGTCACCGC GGACATCCTG 
GAGGGGATCA CGCGGGACGC GGTGATGGAG CTGGCGCTGG AGGAGCTGGG GCTCGAGACG 
GAGGAGCGGG ACGTGGCCCG CACCGAGCTC TACGCCGCCG ACGAGGTGTT CCTCACCGGC 
ACCGGCTTCC AGATAGCCCC CGTGGTGGAG ATCGACGACC GGCCCGTGGG CTCGGGCGAG 
GTGGGCCCGG TGGCCTCCAG GCTGCAGGAG CTGTACTTCA GGGCCGCGCG CGGCGGGTGG 
GAGAAGTACG CCGGCTGGAC CGTCCCGGTG GAGCTCAAGG AGAGGACCGC CCGGTGA
 
Protein sequence
MTRSGFTVSE AEWCYHDGEF VRLGEVRLSP ATHALNYGTG VFEGIRAYWN AERQTLRVLK 
MREHYERFEK SCRVLHIDLG LGVDELCEIT LEILRRNAPR EDTYIRPLAY KSAESIGVKL 
DLPASLSIFT TPMGNYVELT GLRCCVSSWR RIPDNAMPAR AKLTGSYVNT ALAVDAAHRA 
GYDEAIFLTH DGFVSEASAA NIFLVRKGRL ITPPVTADIL EGITRDAVME LALEELGLET 
EERDVARTEL YAADEVFLTG TGFQIAPVVE IDDRPVGSGE VGPVASRLQE LYFRAARGGW 
EKYAGWTVPV ELKERTAR