| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2890 |
|---|
| Symbol | |
|---|
| ID | 4117351 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 2891257 |
|---|
| End bp | 2892522 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 638037661 |
|---|
| Product | cysteine desulphurase-like protein |
|---|
| Protein accession | YP_645613 |
|---|
| Protein GI | 108805676 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | [TIGR01976] cysteine desulfurase family protein, VC1184 subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.74738 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGAGG GGATGCGAGT GGCGTACGAC GTGCGCGCCG TCCGCGAGCA GTTCCCCGCG
CTGCGCCGGG AGCAGGACGG CCGTCCGGTG GTGTACCTGG ACGGTCCGGG CGGCTCCCAG
GTCGCCCGGC AGGCGATGGA CGCGATGCTC GGCTACATGG AGGGCGGCGG GGCCAACCTG
CACGGCGCCT TCGCCACGAG CGTGGAGACG GAGGAGATGA TCTCCTGCTG CCGCCGGGAG
GTGGCCGCGT TTCTGAACGC CGCGCCGGAG GAGGTCGTCT TCGGTCAGAA CATGACCACC
CTGACCTTCG CCCTCTCCCG GGCTCTGGCG CGCGGGTGGG GCGCGGGGGA CGCCGTGGTG
GTTACGGAGT TGGATCACCG GGCCAACGTG GACCCCTGGC TCCTGGCCGC CCGGGAGAGG
GGGGCCGGGA CGCGCTGGGT GAGGGTCGAT ACGCGGACGC TGACCCTGCA GCCGGAGGAT
GTGGAGCGGG CCGTGGACGG GGCGGCGGTG CTCGTCGCGG TGGGGCTGGC CTCTAACGCG
GTGGGCACGG TGAACGACGT CTCCGCCATA GCGGAGCGGG CGCACGCGGC GGGCGCGGTC
GTCGCGGTGG ACGCCGTGCA TGCGGCGCCG CACATGCCCC TGGACCGCGA AGCCCTGGGG
GCGGACATCC TGACCTGCTC GGCGTACAAG TTCTTCGGCC CGCACGTGGG GATCGCCGTC
GTGAGGCGGG AGCTGCTCGA GAGGCTCCAG CCCTACAAGG TGCAGCCTGC CCCGGATGGC
ATCCCGGAGC GGCTGGAGAC GGGCACCCAG AACCACGAGG GGATAGCCGG GGTGAGGGGC
GCGCTGGAGT TCGTCGCCTC TCTGGGCAGG GGTGCCGCGT TGCGGGAGCG CCTGGTCTCG
GGGATGGCCG CGATCGAAGC CCACGAGGCC GCCCTCGCCG CCGAGCTGCG CGCCGCCCTT
CGCGAGGTGC CAGACCTCAC GCTCTACGCC GCTCCCGAGG GGGTGCCCAA GACCCCCACC
TTCGCCTTCC GCCTGGGGAA CCTCTCCCCG CGGGAGGTCT GCGTCCGGCT CGCGCGGGAG
GGGATCTTCG CCGCCGACGG GGACTTCTAC GCCTCCACGC TCGCCGAGCG GCTCGGGGTC
CGGGACAGCG GGGGTCTCGT CCGGGTCGGG CTCGCACCCT ACAACACCCG CGAGGAGATG
CAGCGCCTCC TGCAGGCGCT CGCCGGGCTC TCCCGGGGCC GGACCTCCCG GGCTTCCGGG
GTATAG
|
|---|
| Protein sequence | MEEGMRVAYD VRAVREQFPA LRREQDGRPV VYLDGPGGSQ VARQAMDAML GYMEGGGANL
HGAFATSVET EEMISCCRRE VAAFLNAAPE EVVFGQNMTT LTFALSRALA RGWGAGDAVV
VTELDHRANV DPWLLAARER GAGTRWVRVD TRTLTLQPED VERAVDGAAV LVAVGLASNA
VGTVNDVSAI AERAHAAGAV VAVDAVHAAP HMPLDREALG ADILTCSAYK FFGPHVGIAV
VRRELLERLQ PYKVQPAPDG IPERLETGTQ NHEGIAGVRG ALEFVASLGR GAALRERLVS
GMAAIEAHEA ALAAELRAAL REVPDLTLYA APEGVPKTPT FAFRLGNLSP REVCVRLARE
GIFAADGDFY ASTLAERLGV RDSGGLVRVG LAPYNTREEM QRLLQALAGL SRGRTSRASG
V
|
|---|
| |