| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2715 |
|---|
| Symbol | |
|---|
| ID | 4116205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 2726847 |
|---|
| End bp | 2728322 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638037488 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_645442 |
|---|
| Protein GI | 108805505 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGCGAGG GCAGCGCGGC CACGAAGACC GTAGAGAGCG CCGTACCGGC CAGGATGGAC
CGGCTCCCGT GGAGCGGGTG GCACTGGCTC GTCATAGCGG CGCTCGGGAT AACCTGGATC
CTGGACGGCC TCGAGGTGAC CATCGTCGGG AACATAGCGG CCGTCCTCAC GCAGCCCGAG
TCCGGCCTCG ACCTCACCGA GGGGCAGGTC GGGCTCGCCG GCGGCATCTA CATCGCCGGG
GCCTGCACGG GGGCGCTCTT CTTCTCCTAC CTCACCGACC GCTACGGGAG AAAGAGGCTC
TTCCTGATCA CGCTGGCCAT CTACCTGCTC TTCACGGTGG CCACCGCCTT CTCGTGGAAC
TTCTGGAGCT TCGCCGTCTT CCGCTTTCTG GCGGGCACCG GCATCGGCGG GGAGTACTCC
GCCATCTACT CGGCCATAGA CGAGCTCATC CCGGCCCGGG TGCGGGGCCA GGTCGCGCTG
GCCATCAGCG GCTCGTACTG GGGAGGGGCG GCGGTCGGCA GCCTGCTGAG CGTGGCGCTG
CTCTCGGAGG TCTTCGTGTC GCAGTTCTAC GGCTGGCGGC TCGCCTTCGG GCTCGGGGCC
GTGCTGGGCC TGTGCGTGCT CCTGATCCGG CGCTACATCC CCGAGAGCCC GCGCTGGCTG
GCCACCCACG GCCGCAACGA GGAGGCCGAG CGCGTGGCCG CGGGCATAGA GGAGCGGGTA
AAGCGCGAGA AGGGGCTGCG GGAGCTTCCG CCCATCGACG AGGACGAGAA GATCACCATC
GAGCAGCGCG AGAGCATCGG GTTCGGCCCC ATACTGCGGG CGATGTTCCT GATGTACCCC
AGGCGCACGG TGCTGGGGCT CGTGCTGATG GGCACCCAGG CCTTTCTGTA CAACGCCGTG
CTCTTCACCT ACGGCCTGAT CCTGAGCGGC TACTACGGGG TGCCGGGCGG GAACGTCGGC
TACTACCTGG CGGCCTTCGC CGTCGGCAAC CTGTGCGGCC CGCTGCTTCT GGGCCGGCTC
TTCGACCGGG TGGGGCGGGT GCCCATGATC TCGGGCTGCT ACATAGCCTC CGGGGCCGTG
CTCGCCCTCT CGGCCTTTCT GTTCCACCAG CGGGTGCTCG ACGCCACCAC CCTCACGGCG
CTGTGGACCC TCATGTTCTT CTTCGCCTCC TCGGCGGCCA GCGCCGCCTA CCTCACGGTG
AGCGAGGTCT TCCCGATGGA GATCCGGGCC ATGGCCATCG CCCTCTTCTA CGCGATAGCC
ACCGGGCTCG GCGGGGTCAC CGGCCCGATC ATCTTCGGCC AGCTCATCGG CACCGGCGAC
CGGTCGAACC TGCTCGTCGG GTTCATCATC GCCGGGGCGC TGATGCTCGT GGCGGCAGTC
TTCGAGATGT TCCTCGGGGT GCGGGCGGAG CGGCGCTCCC TGGAGAGCGT GGCGGCCCCC
CTCACCGCGA TAGAAGAGCA GACGGGGTCG GCGTAG
|
|---|
| Protein sequence | MSEGSAATKT VESAVPARMD RLPWSGWHWL VIAALGITWI LDGLEVTIVG NIAAVLTQPE
SGLDLTEGQV GLAGGIYIAG ACTGALFFSY LTDRYGRKRL FLITLAIYLL FTVATAFSWN
FWSFAVFRFL AGTGIGGEYS AIYSAIDELI PARVRGQVAL AISGSYWGGA AVGSLLSVAL
LSEVFVSQFY GWRLAFGLGA VLGLCVLLIR RYIPESPRWL ATHGRNEEAE RVAAGIEERV
KREKGLRELP PIDEDEKITI EQRESIGFGP ILRAMFLMYP RRTVLGLVLM GTQAFLYNAV
LFTYGLILSG YYGVPGGNVG YYLAAFAVGN LCGPLLLGRL FDRVGRVPMI SGCYIASGAV
LALSAFLFHQ RVLDATTLTA LWTLMFFFAS SAASAAYLTV SEVFPMEIRA MAIALFYAIA
TGLGGVTGPI IFGQLIGTGD RSNLLVGFII AGALMLVAAV FEMFLGVRAE RRSLESVAAP
LTAIEEQTGS A
|
|---|
| |