Gene Rxyl_2500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_2500 
Symbol 
ID4117089 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand+ 
Start bp2515059 
End bp2515736 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content46% 
IMG OID638037278 
Productglutamate synthase (NADPH) GltB3 subunit 
Protein accessionYP_645236 
Protein GI108805299 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0070] Glutamate synthase domain 3 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.0493584 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGGGATC TAAGGGAGCG TTCAGTTCGG GAGCTAAACT ATTATTTGCA CCACAACGCA 
GTTAAAAACG GGATTACAGA GGTGCAAATA TTTAATCCCG ATGGTGCTCA TCATATTGCA 
GTGGGTTTGG ATGCACCAAT CAAAGTAGAT ATCTTGGGCA ACGCCGGATA CTTTGTTGGG 
GGAATGAACA AACAGGCGCA TATCACTGTG CACGGCAATG TGGGTTGGAG TGTTGCCGAA 
AACATTATGT CTGGCGTTGT AAGAGTGAAA GGCTACGCCT CGGAATGTGC TGGAGCTTCT 
GGGCACGGTG GGCTCCTGGT AATAGAAAAG GATGCCTCCT CACGCTGCGG AATTTCCATG 
AAAGGAAACG ATATCGTAGT AGGAGGCAGC GTAGGGCATT TCTCGGCTTT CATGGCTCAA 
GCTGGCCATT TGGTGGTTTG TGGGAATGCA GGGGATGGAT TGGGAGACTC ACTATATGAG 
GCAGTGATTT ATGTACGTGG CGAAATCCGT AGTCTCGGCG CTGATGCTCA AGAAGAACCT 
ATGGCAGAAG ATGATTACAA AACTTTAGCC GCTCTTCTTG AGAAAGCAGG ATTCAAACAC 
CATCCAGAAG ACTTTAAAAG AATAGCTTCT GCTAAAAAAT TATATCATTG GAACGCTGAG 
CATTACCAGG AGTATTAG
 
Protein sequence
MWDLRERSVR ELNYYLHHNA VKNGITEVQI FNPDGAHHIA VGLDAPIKVD ILGNAGYFVG 
GMNKQAHITV HGNVGWSVAE NIMSGVVRVK GYASECAGAS GHGGLLVIEK DASSRCGISM 
KGNDIVVGGS VGHFSAFMAQ AGHLVVCGNA GDGLGDSLYE AVIYVRGEIR SLGADAQEEP 
MAEDDYKTLA ALLEKAGFKH HPEDFKRIAS AKKLYHWNAE HYQEY