| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2286 |
|---|
| Symbol | |
|---|
| ID | 4117506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 2297664 |
|---|
| End bp | 2299394 |
|---|
| Gene Length | 1731 bp |
|---|
| Protein Length | 576 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638037066 |
|---|
| Product | IS4 family transposase |
|---|
| Protein accession | YP_645028 |
|---|
| Protein GI | 108805091 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGGCA GGCAATCGGA TCTAGCCGGT GGCGGGCACC CCTACCTCGA CCACGTGCGA
CGGGACTCTT TCTACGGCTT CCTCGCTTTG CACCGGCAAG AGTTGTTCTC TGACGAGGAC
TTCGCCGAGT TCTACTGCCC GGACAACAGG CGCCCGAGCG TCCCCCCGAG CCTGCTGGCG
ACGGCGCTGC TCTTGCAAGC CTACGAAGGC GTCTCCGACG AGGAGGCCAA GGCGCGGGCG
GACTTCGACC TGCGCTGGAA GGTCGCGCTG GGCGTAGGTT TGAAGGAGCG GCCTTTCGCC
AAGAGCACGC TGCAGTTGCT TCGGGCGCGC CTGATCATCA ACGAGCGTAT GCGAACGGTT
TTCCGCAGGA GCCTGGACTT CGCTCGCCAT ACAGGCTACC TCCCGAGCCG CAGGCTCAAG
GTCGTTCTGG ACACCAGCTA CGTCCTGGGC CGGGGAGCGG TCAAGGACAC CTACAATCTG
CTGGCCGACG GGATCGTCAT GCTGGTGCGG GAACTGGCCG CCGGGGCATG CTCAGACCCG
GAGCAATGGG CGCGCGAGCG CGGCCTGGGA CGCTACTTCG GCTCGTCTCT GAAGGGAGAG
GCGGGCATCG ACTGGGACGA CCCCGAGGCC CGGCAAGCGT TCCTGGAAGG CGTGGTCGCG
GACGCGGATC GCTTGCTGAA GGTGGCCCGA GAGGCGGTGG AGGGTTCTAC TGCGGGCGAT
CCCGAGCTTC GCTGCGGGCG GCTGCGTGAT GCGGCGCTTC TGTTGGAGCG ACTGCTGATG
CAGGACATCG AGCGCCGGGA AGACGGGGCT CGTCTCAAGC AAGGAGTCAG CCCGGATCGG
GTGGTCTCGG TGCACGACCC CGAGATGAGG CACGGTCGCA AGAGCGAGAG GCGACGTTTC
GACGGGCATA AGGCGCAGGT CGCGGTCGAT CCCGAGAGCC AGTTGATCAC GGCAGCGGAC
GTTCTGGCGG GCAACGCCCC CGACCACGAG CGGGCGCTGG AGCTGGTCGA ACAGGTGGAG
GCGAACGCCG ACGCCGTGGT CGAGGAGGTG GTAGGTGACT GCGCCTACGG GGACGGCGAC
ACCCGCAAAA CCTTCGCCGA GGCCGGGCGG AGGCTCGTAG CGAAGGTAGC GACAAGGCGC
GGGGTCACCC AGTTCCCCAA AGAGGACTTC CGGATCGATC TGGAAGAGAT GAGTTGCGCG
TGCCCCGCGG GTCAAAAGAC ACGGAAGGTG GTGTCGATCA GTTCGGGCGA TCGCTACGGC
GCTCCGGGCG TCCCCTTACG GGCATTTCGC TTCGACGCGG CCATCTGCGA CGTATGCCCG
CTCAGGTCCT CGTGCGTGCG AGCGCACGTC GGCAAGGGTC GGCTGGTTAT GATCCACCCG
CAGGAAGCTC TGCTGCAAGA GGCGAGGGCA TTCCAGCGAA GCGAGGCGTT CGCGCCGTAC
CGCGAGCTAC GTCAAGCAGC CGAGCACAGG CTGGCTCGGC TGATGCAACT CGGCGTTCGC
CAGGCACGCT ACTTCGGTCG GACGAAGACG CTCTTCCAGC TCCTTATGGC CGCGACCGTC
GCCAATCTTA CGCTCGTGGC GACGAGGGTC GGCCTCATGC GAGATCGCAA CCACCCTCAG
ACGATTATCT CCATACATGT CCACGCTTTG TTTATGGTTC GCCGGGTTTT CGCTACTCTA
TCGCCCCGCT CGGAGCCTGG GTTTTCGGCC ACGCTTCTAG AAGTTCTGTA A
|
|---|
| Protein sequence | MLGRQSDLAG GGHPYLDHVR RDSFYGFLAL HRQELFSDED FAEFYCPDNR RPSVPPSLLA
TALLLQAYEG VSDEEAKARA DFDLRWKVAL GVGLKERPFA KSTLQLLRAR LIINERMRTV
FRRSLDFARH TGYLPSRRLK VVLDTSYVLG RGAVKDTYNL LADGIVMLVR ELAAGACSDP
EQWARERGLG RYFGSSLKGE AGIDWDDPEA RQAFLEGVVA DADRLLKVAR EAVEGSTAGD
PELRCGRLRD AALLLERLLM QDIERREDGA RLKQGVSPDR VVSVHDPEMR HGRKSERRRF
DGHKAQVAVD PESQLITAAD VLAGNAPDHE RALELVEQVE ANADAVVEEV VGDCAYGDGD
TRKTFAEAGR RLVAKVATRR GVTQFPKEDF RIDLEEMSCA CPAGQKTRKV VSISSGDRYG
APGVPLRAFR FDAAICDVCP LRSSCVRAHV GKGRLVMIHP QEALLQEARA FQRSEAFAPY
RELRQAAEHR LARLMQLGVR QARYFGRTKT LFQLLMAATV ANLTLVATRV GLMRDRNHPQ
TIISIHVHAL FMVRRVFATL SPRSEPGFSA TLLEVL
|
|---|
| |