| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2038 |
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| Symbol | |
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| ID | 4115848 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | + |
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| Start bp | 2063981 |
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| End bp | 2065234 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638036825 |
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| Product | lycopene beta and epsilon cyclase |
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| Protein accession | YP_644795 |
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| Protein GI | 108804858 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0644] Dehydrogenases (flavoproteins) |
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| TIGRFAM ID | [TIGR01790] lycopene cyclase family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCCTGAGG CCAACGACAG CGGAGTAGCG GTGAAACAAC ATGCCGGGCG AGCCTCCGAG
GGGCTCGCCC GGGTTCTATC TTCGCGCAGA GAACCGCGGA TAGCGCTCGT AGGGGCCGGG
CTCGCCGGAA GCAGCCTGGC TCTCGCGCTT CTCTGGAGAG GTTTCCGCGG CCAGGTCACC
CTATTCGACA GCAGGACAGA TTTTTCCCGA GAGCAGCGCT GGTGCAGCTG GGGTCCCCTG
CCGGAGCCGC TGTCTGACCT AACAGATGCC TCATGGCCTG CGTGGAAGGT CATCTGCGGG
AGTAAGAGGG TCTTGTGCCG GCTCCCCGAG CGTCCTTACC TCCATCTCTA CGCGCCGAGG
TTTTTCAACT ACGCGCACCA GCAGCTGGAG AAAGCGCCGG GCTTTGCACT GAACCTCGGC
GTCGCGGTGC ACATCATAGA GGAGAAAAGA GATCGAGTAA GGTTGCAAAC CGACGCAGGC
GAGCTGGAAG CGGACTTTGT CTTTGACAGC AGACCAACCG GACAGGCAGG TGGTTCCCCA
CCACACCCCT CTGACCAGGC AATCCTCTAC CAGTCATTCC GCGGCTGGGT TTTAGAGCTC
GGTCAGAGAT GTCTTGAAAC AGGCGCCCTG ACCCTTATGG ACTTCAATAC GACTCAGGGA
AACGGCATAT CTTTCATTTA CGTCCTACCC TTCTCGGCCG ACCGGGCGCT CGTGGAGAGC
ACATCGCTCT CGCAGCAACC CGATAGCAAA GAAGAGCACG TTGCGAGGAT CAGGGATTAT
TTGGAGCGGC TCGGAGTCCG CGAATACCTC GTCAGCGCCG AGGAGTGGGG CCTACTTCCG
ATGACGACTA CGAGCTTACC GAACAGGCCG GGAAGGAAGT GGGTCAGGAT AGGGCAAGCC
GGCGGTGCCC TGCGCCCCTC AAGCGGCTAC ACCCTCGTCA ATGCGCTGCG CCAGAGCCAG
GCCATAGCAG ACGCTCTGAT AGAGGGCAGA GCGCCGCGGT CGCGACCCAT ATCTCGCAAG
TACATGATCT TCGACGATAT ATTTCTGGAA GTCCTGCGCA CCTCGCCTGA GTTGGTCAGA
GAGGGCTTGG TGAATATGTT CGAGCGCATT AGAGAGGACG CTGTCGTACG GTTTTTATCG
AGCGAGAGCA GCTTTGCAGA CGATGCAAGG CTCGTTGCAG CGCTCCCAAA GACGCCCTTC
GCTCGCGCTG CGCTGCGAAG GTTTAAAACT TATGTTACCC CGCTCATACG GTAA
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| Protein sequence | MPEANDSGVA VKQHAGRASE GLARVLSSRR EPRIALVGAG LAGSSLALAL LWRGFRGQVT
LFDSRTDFSR EQRWCSWGPL PEPLSDLTDA SWPAWKVICG SKRVLCRLPE RPYLHLYAPR
FFNYAHQQLE KAPGFALNLG VAVHIIEEKR DRVRLQTDAG ELEADFVFDS RPTGQAGGSP
PHPSDQAILY QSFRGWVLEL GQRCLETGAL TLMDFNTTQG NGISFIYVLP FSADRALVES
TSLSQQPDSK EEHVARIRDY LERLGVREYL VSAEEWGLLP MTTTSLPNRP GRKWVRIGQA
GGALRPSSGY TLVNALRQSQ AIADALIEGR APRSRPISRK YMIFDDIFLE VLRTSPELVR
EGLVNMFERI REDAVVRFLS SESSFADDAR LVAALPKTPF ARAALRRFKT YVTPLIR
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