Gene Rxyl_1390 details

Gene Information

• Locus tag: Rxyl_1390
• ID: 4116468
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rubrobacter xylanophilus DSM 9941
• Kingdom: Bacteria
• Replicon accession: NC_008148
• Strand: +
• Start bp: 1414894
• End bp: 1415385
• Gene Length: 492 bp
• Protein Length: 163 aa
• Translation table: 11
• GC content: 76%
• IMG OID: 638036183
• Product: 16S rRNA processing protein RimM
• Protein accession: YP_644165
• Protein GI: 108804228
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.0279558
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGGCGAGC TGGCCGACCC GGTCGTGATC GGCACCATCA CCGCCCCCCA CGGGGTGCGC 
GGCACGGTCA GGGTCCGGCC CGCCGGGGAG GGCCGGCACC TGCGCGAGGG CCTCTCCCCG 
CTCGTCGGCG GCAGGAGGCG CAGGATACTG CGGGCCCGCC GGACGCCGAA GGGCTTTCTG 
GTGGACCTCG AGGGCGTCCC GGACCGCTTT CGGGCCGCGG AGCTCAGGGG CGAGGACCTC 
CTGCTGGACC GCTCGGAGCT CGACGCCCCG GAGGAGGACG AGTTCTACGT GGCGGACCTG 
GTGGGCCTGG AGGCCGTGGA CGAGCGCGGG GGGGCGCTCG GGGAGGTGAT CGAGACCTTC 
CCCACCCCGG CGCACGAGGT GCTCGTGGTC CGGGGAGAGG GAGGGCTGCT GTACGTTCCG 
TTCACCCGGG AGCACGTGCC CGAGGTGGAC CCGCGGGCGG GGCGGGCGGT CGTCCGGCCC 
CCCGAGGAGT AG 

 

Protein sequence

MGELADPVVI GTITAPHGVR GTVRVRPAGE GRHLREGLSP LVGGRRRRIL RARRTPKGFL 
VDLEGVPDRF RAAELRGEDL LLDRSELDAP EEDEFYVADL VGLEAVDERG GALGEVIETF 
PTPAHEVLVV RGEGGLLYVP FTREHVPEVD PRAGRAVVRP PEE