Gene Rxyl_1220 details

Gene Information

• Locus tag: Rxyl_1220
• ID: 4116282
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rubrobacter xylanophilus DSM 9941
• Kingdom: Bacteria
• Replicon accession: NC_008148
• Strand: +
• Start bp: 1240534
• End bp: 1241052
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 638036010
• Product: ThiJ/PfpI
• Protein accession: YP_643998
• Protein GI: 108804061
• COG category: [R] General function prediction only
• COG ID: [COG0693] Putative intracellular protease/amidase
• TIGRFAM ID: [TIGR01382] intracellular protease, PfpI family

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGGCTGC AGGGAAAGAG GGTCGCCGTG CTGGTCGCCG AGGGGTTCGA GGATCTGGAG 
TACTGGGTCC CGCTCATGCG GCTGCGGGAG GAGGGGGCAG AGGTGGTCTC GGTGGGCCCG 
ACCCTGGACC CGGTGCGCGG CAAGAACGCC CTGCAGGCCA GGGCGGACGT CACCCCGGAG 
CAGGTCGACG CCTCGCAGCT CGACGGGGTC GTGGTCCCCG GGGGCTGGGC CCCGGACAAG 
CTGCGGCGCT ACCCCGAGAT CACGGGCCTC GTCCGGCGGG TGCACGAGCG GGGCGGGATC 
GTGGGGATCA TCTGCCACGG CGGTCTGGTC GCCATCTCCG CCCGGATCGT CGAGGGGGTG 
CGGGCGACGG GCTCGCTCGG CATAAAGGAC GACCTGGAGA ACGCCGGGGC CGTCTGGGTG 
GACAAGCCGG CCTTCCGGGA GGGCAACCTG GTCTGGGGCC GGGTCGTGCC GGACATCCCC 
GACTTCTGCC GGGAGCTGGT CGCCGCGCTC GCCGGGTGA 

 

Protein sequence

MRLQGKRVAV LVAEGFEDLE YWVPLMRLRE EGAEVVSVGP TLDPVRGKNA LQARADVTPE 
QVDASQLDGV VVPGGWAPDK LRRYPEITGL VRRVHERGGI VGIICHGGLV AISARIVEGV 
RATGSLGIKD DLENAGAVWV DKPAFREGNL VWGRVVPDIP DFCRELVAAL AG