Gene Rxyl_1158 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_1158 
Symbol 
ID4116842 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand- 
Start bp1185209 
End bp1185616 
Gene Length408 bp 
Protein Length135 aa 
Translation table11 
GC content58% 
IMG OID638035948 
ProductTfp pilus assembly protein PilE 
Protein accessionYP_643936 
Protein GI108803999 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4968] Tfp pilus assembly protein PilE 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCACT GGTTCGGGCG CAGGCTGCGC GAGATGCAGG AGAAGAGCAG GGACGAGCGA 
GGCTTCACCC TCATCGAGCT GCTGGTCGTC GTGATCATCA TCGGCATCCT CGCCGCCATT 
GCGATACCGG CTTACCTCTC CCAGAGAGAT CGGGCAGAGG AGCGCGCAGC TCAGTCAAAT 
GTCAGAAACG CCGCTACAGC TCAAGTAGCT TATTATACGG AGAAAGGTAA GTACGCTCCG 
GACGCCACTA CGTTGGCTGA GGCGGGTTTC AATCAGGGCT CTCCTGAGGT AGACGTTTTT 
GGTGATACCG ATAGCTTCTG TGTAAGCGCA ACCGGCGGCG GCGAGACCTA CCGTATGACG 
CAGGATGATG GTCGTCCCAC TATAGGAGCT GAGTGCACCG CACCGTAA
 
Protein sequence
MLHWFGRRLR EMQEKSRDER GFTLIELLVV VIIIGILAAI AIPAYLSQRD RAEERAAQSN 
VRNAATAQVA YYTEKGKYAP DATTLAEAGF NQGSPEVDVF GDTDSFCVSA TGGGETYRMT 
QDDGRPTIGA ECTAP