| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_0719 |
|---|
| Symbol | |
|---|
| ID | 4116527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 752585 |
|---|
| End bp | 753637 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 638035504 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_643501 |
|---|
| Protein GI | 108803564 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00305624 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGTAG CCGTCGTCGG AGCCACGGGG AACGTGGGGA CCAGCGTGCT CGGGGCCCTC
GCCGGGGAGG AGCGGGTGGG CTCGGTGCTG GGGATCGCGC GGCGCCTCCC GGACCTCTCC
CTGCCCAAGG TGGAGTGGGC GGCCGCGGAC GTGACCCGCG ACGACCTCGC GGAGCGCCTC
TCCGGGGCGG ACGTCGTGGT GCTGCTCTCC TGGCTCATCC AGCCCTCGCG CGACCTCAAC
AAGCTCTGGA TGGCCAACGT GGAGGGGACG ATGCGGGCCG CGCGGGCGGC GGCCCGGGCA
GGGGCGGGGG CGATCCTGTA CGCCTCCTCG GTGGGCGCCT ACTCGCCCGG GCCGAAGGAC
CGGAGGGTGG ACGAGCGCTG GCCCACCGGC GGGGTCGCGG GCTCCTACTA CGCCCGGCAG
AAGGCCGAGG TGGAGCGCAG GCTGAACCGG TTCGAGGCCG AGCACCCCCG GGTGCGGGTG
GTGAGGATGA GGCCGGGGCT GGTCTTCAAG CGGGAGGCCG CGCAGGGCAT CCGGCGGCTC
TTCGGCGGGC CGCTGTTCCC CGGCTCTCTG GCCCGGCCGG GCCTCATAAA GGCCGTCCCC
GAGATCCCGG GCCTGCGGGG ACAGGTCGTG CACTCCTACG ACGTGGGGGA GGCCTTTAGG
CTCGCCGCCG TGCGGGAGGT GCGCGGGGCG TTCAACCTCG CCGCCGAGCC CCCGCTGGAC
GCCGCCGAGC TGGCCCGGGA GTTCGGGGCC CGGACGTTCC GGGTCTCGGC CCGGGCGCTC
CGGGCGCTGG TGGGCGCCTC CTGGAGGCTG CGGCTCCACC CCGTCTCCCC GGGGTGGCTG
GACCTGGCGC TCGGCGTCCC GCTCATGGAC ACCGGCCGGG CCCGCCGGGA GCTCGGCTGG
GAGCCGCGGC GGAGCTCGCT CGAGGCGGTG CGGGACCTCA TGGAGGGCCT CAGGAGCGGG
GCCGACCTCG ACACCCCGCC CCTGAGCGCG CGGAGCGGGG GGCGGTTGCG GGGGCGGGAG
TTCGGGACCG GCGTGGGAGG GAGGGAGCCG TGA
|
|---|
| Protein sequence | MRVAVVGATG NVGTSVLGAL AGEERVGSVL GIARRLPDLS LPKVEWAAAD VTRDDLAERL
SGADVVVLLS WLIQPSRDLN KLWMANVEGT MRAARAAARA GAGAILYASS VGAYSPGPKD
RRVDERWPTG GVAGSYYARQ KAEVERRLNR FEAEHPRVRV VRMRPGLVFK REAAQGIRRL
FGGPLFPGSL ARPGLIKAVP EIPGLRGQVV HSYDVGEAFR LAAVREVRGA FNLAAEPPLD
AAELAREFGA RTFRVSARAL RALVGASWRL RLHPVSPGWL DLALGVPLMD TGRARRELGW
EPRRSSLEAV RDLMEGLRSG ADLDTPPLSA RSGGRLRGRE FGTGVGGREP
|
|---|
| |