| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_0311 |
|---|
| Symbol | |
|---|
| ID | 4114772 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 326295 |
|---|
| End bp | 328904 |
|---|
| Gene Length | 2610 bp |
|---|
| Protein Length | 869 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 638035100 |
|---|
| Product | glycogen debranching protein |
|---|
| Protein accession | YP_643099 |
|---|
| Protein GI | 108803162 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3408] Glycogen debranching enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACCGC CGCTGTTTTC GCGCCGGCTC GCGTGGGGGT TCTTCACCGC GCTGGCGTTG
CTCTTGCCGG CCCTGCCCGC CTCCGCGCAG GGCGCCCCGG ACTCCCCCAC GCTCTCGGTG
AGCGAGCGCC TCGAGGAGAG GCGCTACGTG ACGACGGGCG AGCGGGCCTA CGTCGTGGGC
ACCGAGGACG GGCGCTTCCC GGCGATGGGC TTCCACACCC GCGGCGAGAT GGGCGGCGTC
TGGAGCCCCC CGATAAAGCT CCTCGACGGC ATCTGGTTCG GCGTAGACGG CGAGTGGCTC
CCCCCGGCGA CCCGCTTCAC CAGCGGCTAC GGGTACGTGA GGATGGAGCT GCCGGGCCGC
GAGGGGCTCG CCGTCACCCG CACCGACTTC GTCCCCGACG GGCTCCGCGC GGCCCTCTTC
GGCCTCACCT TCAGCGCCGA GACCGAGCAG AGCCTCACCC TCAAGGTGGA CGCCCACTCC
GAGCTCATGG GAGCCTACCC CTGGGGCGAG ACCACCCCGA GCCAGAAGAC CTACAACCTC
GAGGACAGCG TCTCCGTCGA GCACGGCAGG CTCGTCTTCC GGGAGAGGGG GACGCCCCCG
GCCGAGAACG CCCTCCCCCA CGACTGGGCG GCGGTCGTCG GCTCGAGCCT CGAGCCGAGC
GGCAGCGACA CGGGGGAGGA CTTCCGCGGC CCGCAGGACC CGCCCGTGAT CTGCCCCGCC
TCCCCGGAGG AGGCCCCCGA CCGCTGCGAC GACACCGCCT ACGGCAAGGG GAAGGGCGGC
CAGCTCCGCT ACGAGATCAC CGTCCCCGCC GGGGAGACGA GGACCGTGTG GTTCGCCGTC
GCGGGGGCGG ACTTCGACGG CGAGGCCTCC GACGGCGAGG CCCCCGAAGA CGCGGTGGCC
GCGGCCATAG AGGAGCACGA GGCGGCGCTC GCCGACCCCG AGGCGCTGCT CGAGGAGAAG
GTCTCCGGGC GGCTCGCGCT GGCGCGGTAC ACGAGCCTGG ATCTCCCGGG CGACCGGCGG
CTGGAGCGGG GCATAGAGTG GAGCAAGCAG AACCTCGCCG ACTCCGTGCA GGCCGCGGAA
GACCTGGAGA TCCGGGAGAC CAACGCCGGG CAGAGCTACC CGGCCCCCGA GGGTGAGCTC
GACCGGGCGC GCTTCCTCGG CGCAGGCTTC CCGGACTACC AGTGGCTCTT CGCCACCGAC
GGCGAGTACA CCGCCTTCGC CAGCGTCGCC GCCGGGCAGT TCGAGCCCAT AAAGGACCAC
CTGCGGGCGC TCCGGGACGT GAGCGAGATA GACAACGGCG GCAGCGGCAA GGTCGTCCAC
GAGGTCGTGA CCGACGGCAG CGTCTACTTC GGATCCAACG CCGACCCCGG CAACACCGAC
GAGACCGCCA AGTTCCCGAG CGCCGTCGCC CTCGTCTGGC GCTGGACCGG CGACGACGCC
TTCCGCGACG AGATGTACGG CTTCGCCAGG CGCAACATGC ACTACATCTT CCGCGAGCTC
GACGAGGACG GCGACCTCTG GCCCGAGGGC CTCGGCAACG TCGAGCGCGA GGGGATGGGC
GAGGAGAAGC TGGATAATGC CGTCTACACC ATCCGCGGCC TCTACGACCT CGCCGACATG
GCCCGCAGCA GGGGCGACGA AGAGACCGAG AGGTGGGCCG TGAAGCGCAC CCGCGCGATG
GAGCGGCGCT TCGAGCGGGC CTGGTGGTTC GGGCGCGAGG GGGCGACGCA GTACGCCGAC
TCCCTGAGGA ACCCGGGCAA CGAGCGGGTC TTCCAGCGGC ACTGGATCGG GGCGACCCCC
ATGGAGGTCG AGCTCGTGGA CCGCAGGGGC GAGACGGTGC CGGGGCTCGC CTCCCGCGAG
CACGGCCTCG CCGCCCTGCG CGAGCGCGAG CTCGCCTGCT ACACCGACCG CTTCGGGATG
TACCACACCG GGACCGGCCC GACCGCGGCC GGGGGCGGCA ACCCGGGAGC GAGCTGCGAC
GAGCACGTCT CCGAGGTGCC CTCCGAGCGC AGCATCTTCA CGCTCAACAC CGCCGTCATG
GCGGTCGGCG AGGGCAACTA CGGCAGGCTC GGCGAGGACC AGCAGCGGCA CTACACCGGC
GCAAACGCCG CCCTGCAGCT CATCCCCGAC GAGCAGCCCG GGGCGATGCC CGAGATCGCC
CCCTCCCCCG ACTACGGGCG CTCCATAGAC CGGCCGCTCA ACGAGCGGGC GATGGTGCTG
CAGGCCTGGG GCGCCTACGG CACGCTCTGG CCGATCGTCC ACCAGTGGCT CGGCGTCCGC
CCGGACATGG GCCGCGGCGA GCTCTCGGTC GTCCCGCAGG TCCCCGAGGG CTCCTCCCCC
ATCTCCGGCG AGAACATCCG GCTCGGCGAC GGATCGGTCG CCGTCTCCGC GGAGCGAGGC
AGGAACACCT ACCGCACCAC CGTCGAGCCG GACGTGGCGC TCGAGGAGCT CGTCGTCGGG
CACACCCTCC CGCGCGGCGC GAAGGTCCGC AGCGTGAGGC TCAACGGCGA GAGGACCCGC
TACAGGGTCG AGGAGACCAA CCGCGGGCTG GAGGTGCTCG TGGAGGCGGG GACCGAGGGC
GAGCAGGAGC TCGTCGTCCG CACCCGGTAG
|
|---|
| Protein sequence | MAPPLFSRRL AWGFFTALAL LLPALPASAQ GAPDSPTLSV SERLEERRYV TTGERAYVVG
TEDGRFPAMG FHTRGEMGGV WSPPIKLLDG IWFGVDGEWL PPATRFTSGY GYVRMELPGR
EGLAVTRTDF VPDGLRAALF GLTFSAETEQ SLTLKVDAHS ELMGAYPWGE TTPSQKTYNL
EDSVSVEHGR LVFRERGTPP AENALPHDWA AVVGSSLEPS GSDTGEDFRG PQDPPVICPA
SPEEAPDRCD DTAYGKGKGG QLRYEITVPA GETRTVWFAV AGADFDGEAS DGEAPEDAVA
AAIEEHEAAL ADPEALLEEK VSGRLALARY TSLDLPGDRR LERGIEWSKQ NLADSVQAAE
DLEIRETNAG QSYPAPEGEL DRARFLGAGF PDYQWLFATD GEYTAFASVA AGQFEPIKDH
LRALRDVSEI DNGGSGKVVH EVVTDGSVYF GSNADPGNTD ETAKFPSAVA LVWRWTGDDA
FRDEMYGFAR RNMHYIFREL DEDGDLWPEG LGNVEREGMG EEKLDNAVYT IRGLYDLADM
ARSRGDEETE RWAVKRTRAM ERRFERAWWF GREGATQYAD SLRNPGNERV FQRHWIGATP
MEVELVDRRG ETVPGLASRE HGLAALRERE LACYTDRFGM YHTGTGPTAA GGGNPGASCD
EHVSEVPSER SIFTLNTAVM AVGEGNYGRL GEDQQRHYTG ANAALQLIPD EQPGAMPEIA
PSPDYGRSID RPLNERAMVL QAWGAYGTLW PIVHQWLGVR PDMGRGELSV VPQVPEGSSP
ISGENIRLGD GSVAVSAERG RNTYRTTVEP DVALEELVVG HTLPRGAKVR SVRLNGERTR
YRVEETNRGL EVLVEAGTEG EQELVVRTR
|
|---|
| |