| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmcs_1313 |
|---|
| Symbol | |
|---|
| ID | 4110150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. MCS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008146 |
|---|
| Strand | - |
|---|
| Start bp | 1420760 |
|---|
| End bp | 1421752 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638030434 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_638481 |
|---|
| Protein GI | 108798284 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAACG CCCTCCCCGT GGCCAGCGTG TCGTTCGACC TCGACAACGT CTGGTCGTTC
CTCAAGACCC ACGGCGATCC CTCATGGGAG TCCCGGCCCA GCTACCTGAA GACCGCGACA
CCGCGGATCG TCGAGTTCCT CGGCGAGATG AACCTTCGGT CAACCGTTTT CGTCATCGGT
GCGGATGCCG CCCGCGACGA CGGCGCCGAG TCGGTGCGCG CGTTCGCCGC CGCCGGACAC
GAGATCGGCA ATCACTCCTA CGAACACGAA CCGTGGCTGC AGCGCTACCA CGCCGACGAA
CTCGCCGCCG AGATCGACCG CACCCACTCG GCGATCGTCG CCGCAGGCGC ACCGGCGCCC
ACCGGGTTCC GCGGTCCGGG CTACAGCACC AGCCCCACGC TGGAACGTCT GCTCGTCGAA
CGCGGATACA CCTACGACGC CAGCACCTTT CCCACCTGGA TCGGCCCGCT CGCCCGCGCG
CACCACCTGC GCACCGCGCA GCTGAGCGCA GAACAGCGGG AAGAACGCGC AGACCTCTTC
GGCGGGGTGG ACCGGGCGTT GCTGCCGTTG CGGCCCCACC GGACCCCGAG CGGGATCGCC
GAACTGCCCG TCACCACCAT GCCGCTGCTG CGGCTCCCGA TCCACGGGTC CTATCTGATG
CAGCTCTACT CGCTGTCCCC CAGGGTGGCT CGGCTGTACT TCGCCACCGC CGTCCGGCTC
TGCCGGGGTG CGCCACGTCG GCATGACGAT GCTGTTGCAC CCCACCGACC TGCTCGACCG
CCGCGACGCG CCGGCACTCG ACTTCTTCCC CGGCATGGCC GTACCGGCCC GCGAGAAGTA
CGCGTTCATG CAGTGGGTGG TGGCGACGAT GCAGCGCCAC TTCACCGTGC TCGGAACCCG
GGACCACGTC ATCCACGCGC TCGAGGCGGG AGGTACCCAT GCGCCGGCGG CGTGACCCCC
GGCGGCGCAG GCCGATGCCC ACCGCACCGG TGA
|
|---|
| Protein sequence | MTNALPVASV SFDLDNVWSF LKTHGDPSWE SRPSYLKTAT PRIVEFLGEM NLRSTVFVIG
ADAARDDGAE SVRAFAAAGH EIGNHSYEHE PWLQRYHADE LAAEIDRTHS AIVAAGAPAP
TGFRGPGYST SPTLERLLVE RGYTYDASTF PTWIGPLARA HHLRTAQLSA EQREERADLF
GGVDRALLPL RPHRTPSGIA ELPVTTMPLL RLPIHGSYLM QLYSLSPRVA RLYFATAVRL
CRGAPRRHDD AVAPHRPARP PRRAGTRLLP RHGRTGPREV RVHAVGGGDD AAPLHRARNP
GPRHPRARGG RYPCAGGVTP GGAGRCPPHR
|
|---|
| |