| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_5169 |
|---|
| Symbol | |
|---|
| ID | 4095117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008061 |
|---|
| Strand | - |
|---|
| Start bp | 2454370 |
|---|
| End bp | 2454969 |
|---|
| Gene Length | 600 bp |
|---|
| Protein Length | 199 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638018450 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_625016 |
|---|
| Protein GI | 162218065 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02943] RNA polymerase sigma-70 factor, TIGR02943 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000000225682 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTCCG CACACGACGA CCCCGCCTAT CTCGCGCAAC TGCGGCACGA CCTGCTGCGC
TTCGCTCGAC TCCAGCTCCG CGATGCCGAC GCAGCCGAAG ACGCCGTGCA GGAAGCGCTG
GCTGCCGCGT GGTCGCATGC CGGCGAGTTC GCCGGGCTGT CGGCCCACAA AACCTGGGTG
TTCGGCATCC TGCGCAACAA GCTGATCGAC GTGCTGCGCG CACGGCAGCG GATGGTGAGC
CTGACCGCGC TCGATGCCGA GCTCGACGGC GAATCGATCC TCGATCGCGA ATTGTTCAAG
GACAATGGAC ACTGGGCCGC GCATGCGAAA CCGCGACCGT GGCCGAAGCC CGACACGCTG
TTGCAGCAAC AGCAGTTCTG GACGCTGTTC CAGGTCTGCC TCGACCATCT GCCGGAGCAG
ATCGGACGCG TGTTCATGAT GCGCGAATTC CTCGGTGTCG AGATCGCGGA CATCTGCAAC
GAATTGACGT TGACGACGAA TCATTGCAGC GTGCTGCTGT ACCGGGCGCG CACGCGCCTG
CGAACCTGCC TGAGCGAAAA AGGACTGACG ACCGAAGATG CTGCCGGGGA AATGTACTGA
|
|---|
| Protein sequence | MLSAHDDPAY LAQLRHDLLR FARLQLRDAD AAEDAVQEAL AAAWSHAGEF AGLSAHKTWV
FGILRNKLID VLRARQRMVS LTALDAELDG ESILDRELFK DNGHWAAHAK PRPWPKPDTL
LQQQQFWTLF QVCLDHLPEQ IGRVFMMREF LGVEIADICN ELTLTTNHCS VLLYRARTRL
RTCLSEKGLT TEDAAGEMY
|
|---|
| |