| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2999 |
|---|
| Symbol | |
|---|
| ID | 4082943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 3141195 |
|---|
| End bp | 3142649 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638011384 |
|---|
| Product | RNA polymerase factor sigma-54 |
|---|
| Protein accession | YP_618037 |
|---|
| Protein GI | 103488476 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.167711 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTGG GTCCGCGCCT CGATCTCCGC CAGTCGCAAT CGCTGGTGAT GACGCCGCAG
TTGCAGCAGG CGATCAAGCT GCTGGCGCTG TCGAACCTCG AGCTTGAGGC CTATCTGGCC
GAGGCGTTGG AAGGCAATCC GCTGCTCGAC ACGGGCGCAC CCGACAGCGA GGGCGGGGGC
GACGAGCCCG ACGGCGATGC GCCGCCCGCG GCGGAAACGC CTGCCGACAC CGATCGGGCG
CTGGCGTCCG ATGCCGGCAC CGCCGACGAC CTCGACGTCG ATTTCACCGA AGAGCGTTTC
CATCATGACA GCGCGAGCGA CAGCGTCGGC CTGTCGGGTG CGGGCGAGGA CGTGGATTTC
GACAGTTTCG CGGAGGCCGA GGGCTCGCTC CACGACCATC TGCTCGCGCA GGTCGGCGAG
CGGCTCGACG GGATCGAGGC GATCATCGCG GGCCAGCTCG TCGCGCTGAT CGACGAGGCG
GGCTATCTGC GCGCCGACCT TGCCGAACTC GCCGCACAGC TCGGCGTGCC CCTGGCGCTG
GTCGAGGCGG TGCTGCGGGT GGTCCAGGGC TTCGACCCCG CGGGCGTCGG CGCGCGCGAC
CTCGCCGAAT GTATCGCCAT CCAGGCGCGC GAGGCCGACC GCTATGACCC CGCGATGGCG
ACGATGATCG CGCACCTCGA TCTTGTCGCC AAGGGCGCCT TCCCGCAACT GAAGCGCATC
TGCGGCGTCG ATGACGAGGA TCTGGCCGAC ATGATCCGCG AACTGCGCGG CTATGATCCC
AAACCGGGCT TCAGGTTCGG CGGCTCGCCG GTGCAGGCGG TCGTTCCCGA CCTGTATGTC
CGGCGCACCG CGGCGGGCTG GGCGGTCGAG GTGAACAGCG CGACCCTGCC GCGGCTGCTC
GTCAACCGCC GCTATTACAA CGAACTCGCC GCGGGCGCGG CGGCAAAAAG CAAGGCGTGG
CTGTCCGAAC AGCTTGCCGG CGCCAACTGG CTGGTGCGCG CGCTCGACCA GCGCCAGCGC
ACGATCGTCA AGGTGGCGAG CGAGATCGTC AAGCAGCAGG AGGGGTTTTT TCTGCACGGC
GTCGCGCATA TGCGGCCGCT GACCTTGCGC CAGGTCGCCG AGGCGATCGG GATGCACGAA
TCGACCGTCA GCCGCGTCAC CAGCAACAAA TATCTGTCGT GCCCACGCGG CCTGTTCGAG
CTCAAATATT TCTTCTCGTC GGGCATATCG GCGACCGAGG GCGACGGCGC GGTGTCGGCC
GAGGCGGTCA AGAGCCGGAT CAAGGCGTTG ATCGAGGGCG AGGACGCGCG CGCGATCCTG
TCCGACGAGA CGATCGCGCA GAAACTGTCG GCCGAAGGAT TCGACATCGC GCGGCGCACC
GTCGTCAAAT ATCGCGAGGC GATGGGTTAT GGCTCGTCGG TGCAGCGACG GCGGCAGAAA
GCGCTGGCGG GATAG
|
|---|
| Protein sequence | MALGPRLDLR QSQSLVMTPQ LQQAIKLLAL SNLELEAYLA EALEGNPLLD TGAPDSEGGG
DEPDGDAPPA AETPADTDRA LASDAGTADD LDVDFTEERF HHDSASDSVG LSGAGEDVDF
DSFAEAEGSL HDHLLAQVGE RLDGIEAIIA GQLVALIDEA GYLRADLAEL AAQLGVPLAL
VEAVLRVVQG FDPAGVGARD LAECIAIQAR EADRYDPAMA TMIAHLDLVA KGAFPQLKRI
CGVDDEDLAD MIRELRGYDP KPGFRFGGSP VQAVVPDLYV RRTAAGWAVE VNSATLPRLL
VNRRYYNELA AGAAAKSKAW LSEQLAGANW LVRALDQRQR TIVKVASEIV KQQEGFFLHG
VAHMRPLTLR QVAEAIGMHE STVSRVTSNK YLSCPRGLFE LKYFFSSGIS ATEGDGAVSA
EAVKSRIKAL IEGEDARAIL SDETIAQKLS AEGFDIARRT VVKYREAMGY GSSVQRRRQK
ALAG
|
|---|
| |