| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2876 |
|---|
| Symbol | hemC |
|---|
| ID | 4080669 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 3027464 |
|---|
| End bp | 3028411 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 638011260 |
|---|
| Product | porphobilinogen deaminase |
|---|
| Protein accession | YP_617914 |
|---|
| Protein GI | 103488353 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0181] Porphobilinogen deaminase |
|---|
| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.65304 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAGC TTGCGACCCC CGACAACCCG CTTCGCATCG GCACGCGCGC CTCGCCGCTG
GCGATGGCGC AGGCGCATAT GGCGGCGGCC GCTCTGATCG CGGCGCACGG GCTCGCCATG
GCGGCGCTCG AAATCGTGCC GATGACCGCG ACGGGCGACC GGATTCAGGA TCGCGCGCTC
GCCGAGGTTG GCGGCAAGGC GCTGTGGACG CGCGAGCTTG ACGCCGCGCT CGATGCGGGG
ACGATCGACG TCGCCGTCCA TTCGCTCAAG GATGTCGAAA CGCTGCGCGA CGCGCGCTTT
TTCCTGGGCG CGATGCTCGA GCGCGCCGAT CCGCGCGACC GGCTGGTGGT GCGCGAGGGG
ATTGCCGCGC AAAAGATTTC CGAGCTGCCG CACGGCGCCC GGCTGGGGAC GAGCAGCCCG
CGGCGCGCGG CGCAGGTGCG GCGGCTGCGC CCCGATCTCG ACACGGTGTT GCTGCGCGGC
AATGTCGCGA CGCGGCTCGC CAAGCTCGCC GCGGGCGAGG CCGACGCGAC CCTGCTCGCC
GCGGCGGGGC TCGAACGGCT GGGGATGCAC GACATCGGCG CTGTGCAGGG CACGGAACTG
CTGCTGCCGG CGGCGTCGCA GGGCGCGATC GGCATCGAAT GCCGCGCCGA CGACGCGGCA
ACCATCGCGC TGCTCGCCGC GATCGACCAT GCGCCGACGC ATCGCGCCGT CGCCGCCGAA
CGCGCCCTGC TCGCGGTGCT CGGCGGCGAT TGCCGCTCGC CGGTCGCGGC CTATGCGGAG
TGGCAGGCGG ACGGCGTTCT CCGCCTCGAT GCAGAGATTT TCTCCGAAGA TGGCGCCGAT
CATGTCGCGG GGCATGTCAT CGTCACCGAC GCCGGGGTCG TCGCGGCGCT GGGGCATCGG
CTGCTGGCCG AAGCGCCGCC GAGCATCCGG CGGTTGTTCG CGACATGA
|
|---|
| Protein sequence | MNELATPDNP LRIGTRASPL AMAQAHMAAA ALIAAHGLAM AALEIVPMTA TGDRIQDRAL
AEVGGKALWT RELDAALDAG TIDVAVHSLK DVETLRDARF FLGAMLERAD PRDRLVVREG
IAAQKISELP HGARLGTSSP RRAAQVRRLR PDLDTVLLRG NVATRLAKLA AGEADATLLA
AAGLERLGMH DIGAVQGTEL LLPAASQGAI GIECRADDAA TIALLAAIDH APTHRAVAAE
RALLAVLGGD CRSPVAAYAE WQADGVLRLD AEIFSEDGAD HVAGHVIVTD AGVVAALGHR
LLAEAPPSIR RLFAT
|
|---|
| |