| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2622 |
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| Symbol | |
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| ID | 4081577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 2763499 |
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| End bp | 2764098 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638010999 |
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| Product | conjugal transfer protein traF |
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| Protein accession | YP_617661 |
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| Protein GI | 103488100 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCCGCC GTCCGCTCTC CCGCTTCGTG CCGCACATCG CCGGCGCCGT AATTGGTTTC
ACGCTGGTCG CGGCAGTTCT GCCGCTGCCC AAGCTGTTGC TCTGGAACGC CAGCGCCAGC
GCGCCGATCG GGCTTTACCG CGTCCATCCG TTTGCCCGGC CTGCGGTCGG CGACATGGTC
GCCATCATGC CGCCGCCCGC GTTCGCCCGG TTCATGGCCG AGCGCCATTA TCTCCCTGCC
GGCGTGCCGC TGCTCAAGCA TGTCGCCGCG CGTCCGGGCG CGCTGATCTG CCGCCGCGAT
AGGACGGTGA CGATCGACGG GCGCACCGTC GCGGTCGCGC GCGCGTCCGA CGGTCATGGC
CGACCGTTGC CGGTCTGGCG CGGCTGCCGC GTCCTCAGGA CCGACCAACT GTTCCTGCTC
AATGCTGCGC CCGACAGCCT CGACGGGCGC TATTTCGGGC CGATTCCAGC CTCCGGCCTG
ATCGGCCGCG CCACCCCGAT CCTCACCCGC GACACACCGA ATGCGCCGCT GCGCTGGCGC
TCCGGCTGCG CGCGGGGTGC CCCTCTCACC AGCGAAGAAG GAGTCATCTT ATGCAGATAG
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| Protein sequence | MSRRPLSRFV PHIAGAVIGF TLVAAVLPLP KLLLWNASAS APIGLYRVHP FARPAVGDMV
AIMPPPAFAR FMAERHYLPA GVPLLKHVAA RPGALICRRD RTVTIDGRTV AVARASDGHG
RPLPVWRGCR VLRTDQLFLL NAAPDSLDGR YFGPIPASGL IGRATPILTR DTPNAPLRWR
SGCARGAPLT SEEGVILCR
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