| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2414 |
|---|
| Symbol | |
|---|
| ID | 4080852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 2549754 |
|---|
| End bp | 2551946 |
|---|
| Gene Length | 2193 bp |
|---|
| Protein Length | 730 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638010793 |
|---|
| Product | amino acid ABC transporter permease |
|---|
| Protein accession | YP_617455 |
|---|
| Protein GI | 103487894 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component
[COG4597] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.215998 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCATA AACACAGGCG GCTTGCCATC GCTGCGTTGC CCTGGCTGCT GATCGCGGGC
GGGCTTGTGG TCGCCTACGG CCTGTTTGCG ACATTGGCGG ACAATCTAGC GGACCGAAAC
ATCCGGACGG GGTTCGGTTT CCTGTTCGAC CGGGCGGGCT TCGCGATTGG CGAAACGCTG
ATTGCTTACG CGCCTGGCGA TTCCTATGCC GCGGCGCTGG CGGTGGGTCT TCTCAACACG
CTCCTGATAT CGGCGCTCGG CATCATCTTC TCGACCTTGC TCGGCCTCGC GGTCTGCATG
GCGCGCCTGT CGTCCAACTG GCTGCTTGCG AGGCTCTCCG GCCTTTATAT CGAGCTGGTT
CGCAATATTC CCCTGCTGCT CCAGATGTTC GTCTGGTACG CCGCGCTGCT GTTCGGTCTG
CCCGGACCCG GCCCGGGCGC CGTCGGACCG TTCGACCTCG ATAATCGGGG ATTGCACCTC
CCCGCGCTCT CCTTGGCCGA TCCGGGACGG CCGGTCTTGC TCATCGCGAT CGTCGCCTGT
GCGATCCTGC TGGGTGCCGT GCGGCGAGGA GCCGTTCGCA CGCGCACTGC GCTGGCCTTC
GCCGGCATCT CCCTGGTGCC GCTCTTGCTG TGGGGCGGGA TCGATCTGCC GCGGGCGGGG
CGCTTCGGAA CCGTCGGCGG ACTGTCCTTC TCAACGGAGT TTCTGACTCT GGTCACCAGC
CTTTCGGTCT ATGCCTCGGC CTATCTGGCC GAGATATTCC GCGGCGCGAT CCTCGCCGTT
CCAGCAGGGC AGAGCGAGGC CGCCAAAGCG CTCGGCCTGT CGCCCGCGCA AACGATGGGA
CGGATCGTGA TCCCGCAAGC GCTGCGCATT GCCATACCGC CGATGACGAG CTGGCATCTC
AACACGATCA AGAACAGCTC CCTGGGCGTC GCGATCGGAT ATCCCGAATT TGTCTCGGTG
GTCGATACCG TCATCAGCCA GACAGGTCAG GCGATCGAAG GCGTCGGTCT GATCGTCGCG
ACGTTTCTCC TGCTCTCGCT GTCCTTGGCG TTCGTTACCG GCCGCTATGC CCGCCGGTTG
GGCTGGACCG TTGCCGGGCA GCCCGGCCGC AGCATCCAGT CGGCGCCCCT CGAACCCTTT
CCGCTACGCT CGGCGGCGGC CTGGCCGTCG TGGATGCGGC GCAATCTGTT CAGAGGAGGA
CGCCAGTCGA TACTGACCAT CGCGATCCTC GCCATGACCG CGGCTTTCGT CGGCAAGGGA
CTCTCGTGGC TGCTGTTTGA GGCGACATTC GCCGGGGGCG CGGCCGATTG CCGTTTGGCC
AGCGGTGCCT GCTGGCCATT CCTCCGCGAA AATGCGCGGC TTATATTGTT CGGAACCTAT
CCCGAAGCCG AGCAGTGGCG GTCCGCAGCG GCGGCGACGG CGCTGCTTTC CTGCCTCGCG
TTCTCCTTCG TCCCGCGATT TTGGCGTAGC CGCCTCGGCC TAGCCTGGCT CGGCGCGATC
GCGGTGGCGG TACTTCTGCT ACGAGGAGGA TTCGCGGGCC TTTCCTATGT CCCGATGGAG
AAGTGGAGCG GCCTGCCGGT CACATTGCTG CTCGCGAGCC TTGCGGTGGT CGGCGCGTTT
CCGCTGGCCA TACTCCTCGC GTTCGGCCGC AGGTCGACGC GGCGCGGCAT TCGCTGGCCG
AGCGTCGTCT TCATCGAGCT GGTTCGCGGA ACGCCGCTGA TCGGGGTGCT CTTCCTCGCT
GCGGTCCTGT TTCCGCTGTT CGTGCCCTCT TATCTCTCGA TCGACAGCCT GCCGCGCGTC
CAGCTCGCGC TCATATTCTT CACTGCCGCC TATATGGCCG AGGTCATCCG GGGCGGCCTG
CTGGCGGTTC CCGTCGGGCA GGCCGAGGCC GCGCACGCTC TCGGCCTCAC CAAATGGCAG
GCGCGGCGCC ATATCCTGTT GCCGCAGGCG CTGAAAGTCA GCGTACCCGG ACTGGTCAAC
ACTTCGATTA GCGAGGTGAA GAACACGACG CTCGTCCTCA TCGTCGGCGT CTTCGATTTG
TTGCAGACGA CCCGCCTCTC CTACGTCGAG GCGCAATGGC GACCCTATTT CGCCGAAGCC
TATCTTTTCA CCGGGACAAT CTTCTTCCTC CTCTGTTTCT CCCTGTCCCG GCTCAGCATG
AAGATCGAAC GGAAACTAGA CTATGCAGGA TAA
|
|---|
| Protein sequence | MTHKHRRLAI AALPWLLIAG GLVVAYGLFA TLADNLADRN IRTGFGFLFD RAGFAIGETL
IAYAPGDSYA AALAVGLLNT LLISALGIIF STLLGLAVCM ARLSSNWLLA RLSGLYIELV
RNIPLLLQMF VWYAALLFGL PGPGPGAVGP FDLDNRGLHL PALSLADPGR PVLLIAIVAC
AILLGAVRRG AVRTRTALAF AGISLVPLLL WGGIDLPRAG RFGTVGGLSF STEFLTLVTS
LSVYASAYLA EIFRGAILAV PAGQSEAAKA LGLSPAQTMG RIVIPQALRI AIPPMTSWHL
NTIKNSSLGV AIGYPEFVSV VDTVISQTGQ AIEGVGLIVA TFLLLSLSLA FVTGRYARRL
GWTVAGQPGR SIQSAPLEPF PLRSAAAWPS WMRRNLFRGG RQSILTIAIL AMTAAFVGKG
LSWLLFEATF AGGAADCRLA SGACWPFLRE NARLILFGTY PEAEQWRSAA AATALLSCLA
FSFVPRFWRS RLGLAWLGAI AVAVLLLRGG FAGLSYVPME KWSGLPVTLL LASLAVVGAF
PLAILLAFGR RSTRRGIRWP SVVFIELVRG TPLIGVLFLA AVLFPLFVPS YLSIDSLPRV
QLALIFFTAA YMAEVIRGGL LAVPVGQAEA AHALGLTKWQ ARRHILLPQA LKVSVPGLVN
TSISEVKNTT LVLIVGVFDL LQTTRLSYVE AQWRPYFAEA YLFTGTIFFL LCFSLSRLSM
KIERKLDYAG
|
|---|
| |