| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2319 |
|---|
| Symbol | |
|---|
| ID | 4080604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 2447265 |
|---|
| End bp | 2448707 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638010699 |
|---|
| Product | peptidase U62, modulator of DNA gyrase |
|---|
| Protein accession | YP_617361 |
|---|
| Protein GI | 103487800 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.502377 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGCC CCACCGATCC CCGCCGCTTC CTCTATCGCG CCGACGCGCT CGACCCCGAT
CTGGCGCAAA AGCTCGCGTG CGAGGCCTTG GCAAAGGCCG ACGACGGCGA ACTTTACCTG
CAATATCGCG CGACCGAGAG CTTCGGCTTC GACGACGGGC GGCTGAAAAC CGCCGACTAT
TCGACCGATG CGGGTTTCGG CCTGCGCGCC GTGTCGGGCG AGATGACGGG CTTTGCACAC
GCGAGCGACA TCAGCGCCGA CGCGATCCGC CGCGCGGCCG AGACGCTCGC GCTGCTCGAT
CCGGCGAAAC AGGCGCACGC CGCACCGCCG CCGCGCACCA ACCGCCATCT TTATGACGAG
GCGAACCCGC TCGACCTGGT CCCCTTCGCA AAGAAGGTCG CGCTGTGCCA GCAAGTCGAC
GCCGCCGCGC GCGCACGCGA TCCGCGCGTC GTGCAGGTTT CGGTTGCGCT CGCGGGCAGT
TGGTCGGTCG TCGAGATCGT CCGCGCCGAC GGCTTCCTCG CGACCGACAT CCGCCCGCTC
GTCCGCCTCA ACGTCTCGAT CGTGGTCGAG GAGAATGGGC GGCGCGAGAG CGGCTATTTC
GGCCTCGGCG GCCGTTACAT GTACGATCAT CTGTTCGAGG AAGCGCAGTG GAACCGCGCG
ATCGACGAGG CGCTGAGCCA GGCGCTCGTC AACCTCCGCG CCGTCGATGC CCCCGCGGGC
GAGTTTACCG TGCTGCTCGG TCCCGGCTGG CCGGGCGTGC TGCTGCACGA AGCCGTCGGC
CACGGCCTCG AGGGCGACTT CAACCGCAAG GGCACCAGCG CCTTTTCGGG CCGCATCGGC
GAGCGCGTCG CCGCGCCCGG TGTCACCGTG GTCGACGACG GCGCGATGGA AAGTCCCGTC
GGCGGTGGCC GCCGCGGCTC GCTCAGCATC GACGACGAAG GCACCCCGAC GGGCGAAACC
GTGCTGATCG AGGACGGCAT CCTGAAGGGC TATATGCAGG ACCGGCTCAA CGCGCGACTG
ATGGGCGTCG AACCCACGGG CAACGGCCGC CGCGAGAGCT TCGCACACGC GCCGATGCCG
CGGATGACCA ACACCTTCAT GCGCGGCGGC CGTGACGATC CCGCCGAGCT TCTCTCGCGT
GTCAAGAACG GCATTTTCGC GAAGAGCTTC GGCGGCGGAC AGGTCGACAT CGTATCGGGA
AAATTCGTGT TCAGCTGCAC CGAGGCGTAC AAGATCGAGA ATGGCAAGCT GGGCGATTCG
ATCAAGGGCG CAACCTTGAT CGGCGACGGG CCGAGCGTGC TGACCAAGGT CACCGGCATC
GGCAACGACA TGGCGATCGA CGAAGGCATC GGCGTATGCG GCAAGGCGGG GCAGAGCGTC
CCCGCAGGCG TCGGCCAGCC GACCTTGCTG GTGAGCGGCC TGACCGTGGG CGGGACGGCC
TAG
|
|---|
| Protein sequence | MTSPTDPRRF LYRADALDPD LAQKLACEAL AKADDGELYL QYRATESFGF DDGRLKTADY
STDAGFGLRA VSGEMTGFAH ASDISADAIR RAAETLALLD PAKQAHAAPP PRTNRHLYDE
ANPLDLVPFA KKVALCQQVD AAARARDPRV VQVSVALAGS WSVVEIVRAD GFLATDIRPL
VRLNVSIVVE ENGRRESGYF GLGGRYMYDH LFEEAQWNRA IDEALSQALV NLRAVDAPAG
EFTVLLGPGW PGVLLHEAVG HGLEGDFNRK GTSAFSGRIG ERVAAPGVTV VDDGAMESPV
GGGRRGSLSI DDEGTPTGET VLIEDGILKG YMQDRLNARL MGVEPTGNGR RESFAHAPMP
RMTNTFMRGG RDDPAELLSR VKNGIFAKSF GGGQVDIVSG KFVFSCTEAY KIENGKLGDS
IKGATLIGDG PSVLTKVTGI GNDMAIDEGI GVCGKAGQSV PAGVGQPTLL VSGLTVGGTA
|
|---|
| |