Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_2290 |
Symbol | |
ID | 4080786 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 2414708 |
End bp | 2416204 |
Gene Length | 1497 bp |
Protein Length | 498 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638010669 |
Product | type II secretion system protein E |
Protein accession | YP_617332 |
Protein GI | 103487771 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCAT TCGGACGCCG ACCCGGAACC GCTGGCCGCC CCGCCTTTGG CGTGGCAAAG CCGATGCAGG GTGGGCCGGG TGTGCCCGGC GGCGCGCAGT TCCCCGCGAT CGAAACGCCG CCGGCGATCG ACATTCCGCA AATGCCGTCG AACCTGTCAC CCGAAGGCGA GGCGATGGAA CGGCTGAACC AGCGTTCGAC CGCCGAGGCG GTGGAGCCCG AAAAGGCGCA AGGGTTCGAG GCGAGCGTCC ACAAGATCAA GGAACAGGTG CTGCCGCGCC TGCTGGAGCG CGTCGACCCC GAAGCCGCAG CGACGCTCAG CAAGGACGAG CTGACCGAAG AGTTCCGTCC GATCATCCTC GAAGTGCTCG CCGAACTGCG CATCACGCTC AATCGCCGCG AACAATTCGC GCTCGAAAAG GTGCTCGTCG ACGAGCTGCT CGGCTTCGGC CCGCTCGAGG AGTTGCTCGC CGATCCCGAC ATCAGCGACA TCATGGTCAA CGGCCCCTAT CAAACCTATG TCGAGCGCAA GGGCCAGCTC GTCCTAGCGC CGATCCAGTT CCGCGACGAA CAGCATCTGT TCCAGATCGC GCAGCGCATC TGCAACCTCG TCGGCCGCCG CGTCGACCAG ACGACGCCGC TCGCCGACGC GCGCCTCAAG GACGGCAGCC GCGTCAACGT GATCGTGCCG CCGCTCTCGC TTCGCGGCAC CGCCATCTCG ATCCGCAAAT TCTCGGCCAA GCCGATCACG CTCGACATGC TCTGCCAATG GGGCGCGATG AGCCAGAAAA TGTGTACCGC GCTGAAAATC GCGGGCGCCA GCCGCTTCAA CATCGTCATT TCGGGCGGCA CGGGTTCGGG CAAGACCACC ATGCTCAACG CGCTCTCCAA GATGATCGAC CCCGGCGAGC GCGTGCTGAC GATCGAGGAC GCCGCCGAAC TTCGCCTGCA ACAGCCGCAC TGGCTGCCGC TCGAAACGCG CCCCGCGAAC CTCGAGGGCA ATGGCGCGAT CCATATGGGC GACCTCGTCA AAAACGCGCT GCGTATGCGC CCCGACCGCA TCATCATGGG CGAGGTTCGC GGCGCCGAAT GTTTCGATCT GCTCGCCGCG ATGAACACCG GTCACGACGG GTCGATGTGT ACGCTGCACA GCAACAGCCC GCGCGAATGC CTCGGCCGCA TGGAGAACAT GGTTCTCATG GGCGACATCA AGATTCCGAA GGAAGCCATC TCGAAACAGA TCGCCGATTC GGTCGACCTG ATCGTCCAGA TCAAGCGCCT GCGCGACGGT TCGCGCCGCG TCACCAACAT CACCGAGGTG ATCGGCATGG AAGGCGACGT CATCGTCACG CAGGAATTGT TCAAGTTCGA ATATCTGGAC GAGGACAAGG ACGGCAAGAT CGTCGGCGAA TATCGCTCGA TGGGCCTCAG GCCCTATACG CTCGAAAAAG CGCGGCAATA CGGGTTCGAT CAGCCCTATC TGGAGGCGTG TCTTTGA
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Protein sequence | MSAFGRRPGT AGRPAFGVAK PMQGGPGVPG GAQFPAIETP PAIDIPQMPS NLSPEGEAME RLNQRSTAEA VEPEKAQGFE ASVHKIKEQV LPRLLERVDP EAAATLSKDE LTEEFRPIIL EVLAELRITL NRREQFALEK VLVDELLGFG PLEELLADPD ISDIMVNGPY QTYVERKGQL VLAPIQFRDE QHLFQIAQRI CNLVGRRVDQ TTPLADARLK DGSRVNVIVP PLSLRGTAIS IRKFSAKPIT LDMLCQWGAM SQKMCTALKI AGASRFNIVI SGGTGSGKTT MLNALSKMID PGERVLTIED AAELRLQQPH WLPLETRPAN LEGNGAIHMG DLVKNALRMR PDRIIMGEVR GAECFDLLAA MNTGHDGSMC TLHSNSPREC LGRMENMVLM GDIKIPKEAI SKQIADSVDL IVQIKRLRDG SRRVTNITEV IGMEGDVIVT QELFKFEYLD EDKDGKIVGE YRSMGLRPYT LEKARQYGFD QPYLEACL
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