| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1684 |
|---|
| Symbol | |
|---|
| ID | 4081067 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1772305 |
|---|
| End bp | 1774206 |
|---|
| Gene Length | 1902 bp |
|---|
| Protein Length | 633 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638010058 |
|---|
| Product | radical SAM family protein |
|---|
| Protein accession | YP_616730 |
|---|
| Protein GI | 103487169 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1032] Fe-S oxidoreductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.198354 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCCC CCGTCAAGAG GCCGCGCCAC CGCGCGGTCG CCGCGGAGGA GGCTGCGCCC
GAAACGAAGG AAGCGGCGTC GGCGCGATCG GGACATTCGA TCGCGCTGGT CGCCGCACCC
TTCAACTCCT TTCGCCGCCC CTCGATCCAG GTCGGCCTGC TCGCCGCGAT CGCGCGCCAA
TGTGGCTGGA GCGCGCGCAC ACATCATTTG TTCCTCGATT TCGCGGTGAT GATCGGCAGC
GAATTTTACG AAACTATCGC CAATGATCGC GGCGTTGCAG TGGGCGACTG GTTGTTTTCG
GTCGAAGCCT TTGGCTCGGC CGCACCCGAC CCCGACGGAC GTGCCCTGCT CGCCGCCTTC
GACCTCAAGG ATGCCGGGCA GCTGTTGGTC GTCCGGCGCG ACGTCGTGCC GCGTTTCGTC
CGGCTGGCTG CCGAGGAGAT CGCGCGATCG AACCCCACGG TCGTCGGCTT CACCTCGACC
TTTCAGCAGA CCGCCGCCGC GATCGCGATC GCCCGGCGGC TGCGGGCGAT GCTGCCGCAC
GCCCGCTTCC TGTTCGGCGG CGCCAATTTC GAACGCGACA TGGCGGCCGA ATGGATCGCG
CATGTGCCCG AGGTCGAACT GGTGTTGAGC GGCGAAGCCG ACGACAGCTT TCCGGCGCTT
CTCCGCGCCA TCGACGCAGG GGAAGGAATG GACCGCGTCA CCGGGCTGAG CTGGCGCGAC
GCCGACGGTG CGGTGCGGCA GAACAAGCCC GCAAGGATGA TCACGGCGCT CGATCGCAAT
CCGACACCCG ACTATGGCGA ATATTTCGAC CGCGCCGAAT ATCTTGGCCT CGTTCAGATC
GGGCTGCGCA ACGATGTCCG TATCCCCTTT GAAAGCGCGC GCGGGTGCTG GTGGGGCGAG
CATAGCCACT GCGTCTTTTG CGGGCTCAAC GCGCTGACGA TGAAGTTCCG CTCAAAGTCG
CCCGAGCGGG TTTGGGACGA GCTGGCCGAA CTCGCCGAAA GATATCGGAG TTATCATTTC
GAGGCTGTCG ATAACATCGT CGATCGCGGC TACCGCGAGG CGCTGCTTCC CAGGCTGGCG
GCCAGCGACG CGACCTATGA CATTTTTTAT GAGGTCAAGT CGAACCTGAA GCCCGACGAG
ATCCGCGACA TGGCGGACGC GGGAATCCGC ACGATCCAGC CGGGAATCGA AAGCCTGTCG
ACCCCGGTGC TCAAGCTGAT GCGCAAGGGC GTGCGCGGGC TGGACAATGT GAACCTGCTA
CGCTGGTCGG CCCATTATGG CGTCGCGGTG AGCTGGAATG TGTTGTGGGG ATTTCCGGGC
GAAAAAGCCG AATTTTATGC CGAACAGGTG GATTTGTTCC AGCATCTGCA CCATTTGCAG
CCGCCGTCGG CGGGGCTGCG CGTGTGGCTG GAACGCTATA GCCCCTTGTT CAAGGACGAA
GCGAGCTTTC CCAAGATACG CCGCAAGCCC GAACGCTCGC TCGACTTCAT CGTGCCGACG
CGGATCGACA AGGAAGCGAT CGCCTATTTC TTTGAATATG AGCTGGAAAA TACGCTGTCC
GACAGCGACT TCGACGGCAT GGCCGAGGCG ATCGGGGTGT GGAAGGAAGC GTGGATGCGC
GACTGGCGCC CCCAACTGCG CTATTTCTCG TCGCCCGGCG TCGTCACCGT CGAGGACAGC
CGCCACGCGC CCGAACCGCG GCTGACGCGG CTGACCGGAC GCGACGCCAG CATATTCCAG
GCGCTGCTCG AAAAGCCGCT GAGCGCCGGG CGCGTCGCCG AGATGATCGA CGAACCGCTC
CAGCGCGTCG AACGATCGCT GCGCCTGCTG AGCCACGAAG GGCTGATCGC GAGCGAAGGC
GGGCTGCACC TGTCGCTGCC GTTGCCGGCG CGACGGCGAT GA
|
|---|
| Protein sequence | MNAPVKRPRH RAVAAEEAAP ETKEAASARS GHSIALVAAP FNSFRRPSIQ VGLLAAIARQ
CGWSARTHHL FLDFAVMIGS EFYETIANDR GVAVGDWLFS VEAFGSAAPD PDGRALLAAF
DLKDAGQLLV VRRDVVPRFV RLAAEEIARS NPTVVGFTST FQQTAAAIAI ARRLRAMLPH
ARFLFGGANF ERDMAAEWIA HVPEVELVLS GEADDSFPAL LRAIDAGEGM DRVTGLSWRD
ADGAVRQNKP ARMITALDRN PTPDYGEYFD RAEYLGLVQI GLRNDVRIPF ESARGCWWGE
HSHCVFCGLN ALTMKFRSKS PERVWDELAE LAERYRSYHF EAVDNIVDRG YREALLPRLA
ASDATYDIFY EVKSNLKPDE IRDMADAGIR TIQPGIESLS TPVLKLMRKG VRGLDNVNLL
RWSAHYGVAV SWNVLWGFPG EKAEFYAEQV DLFQHLHHLQ PPSAGLRVWL ERYSPLFKDE
ASFPKIRRKP ERSLDFIVPT RIDKEAIAYF FEYELENTLS DSDFDGMAEA IGVWKEAWMR
DWRPQLRYFS SPGVVTVEDS RHAPEPRLTR LTGRDASIFQ ALLEKPLSAG RVAEMIDEPL
QRVERSLRLL SHEGLIASEG GLHLSLPLPA RRR
|
|---|
| |