| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1517 |
|---|
| Symbol | |
|---|
| ID | 4080030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1584368 |
|---|
| End bp | 1584805 |
|---|
| Gene Length | 438 bp |
|---|
| Protein Length | 145 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638009884 |
|---|
| Product | CcmE/CycJ protein |
|---|
| Protein accession | YP_616563 |
|---|
| Protein GI | 103487002 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2332] Cytochrome c-type biogenesis protein CcmE |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.827716 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCAA AGCATCAGCG GCTGATCCTG GCGGTCGCGG CGCTGTGCGG CGTTGCGGGC
GCGGGCGTGC TCGCGGCGAG CGCGCTCCGC GACGAGGCCG CTTATTTCCG CACGCCCGTT
GAAATTGCAG GCGGCAAGGC CGCGGTTGGC GAAGCGATGC GGCTGGGCGG CATGGTTGCC
AAGGGCAGTA TCGTGCGCCA GGCCGACGGC CTCACGATCC GCTTCGTTGC GACCGATGGC
CAGGCGTCGG TGCCCGTCGA ATATACAGGC ATCGTTCCCG ACCTGTTCGG CGAGGAAAGC
GGCATGATCG CCGACGGACG GATGCGCGCC GACGGGACGT TCGTTGCCGA TCGTATCCTG
GCGAAACATG ACGAGCGTTA TATGCCGCCG CAGATGGGCG AGATGCCGAA GAATATGAAG
GCGGCGGTGG AGGGATGA
|
|---|
| Protein sequence | MKAKHQRLIL AVAALCGVAG AGVLAASALR DEAAYFRTPV EIAGGKAAVG EAMRLGGMVA
KGSIVRQADG LTIRFVATDG QASVPVEYTG IVPDLFGEES GMIADGRMRA DGTFVADRIL
AKHDERYMPP QMGEMPKNMK AAVEG
|
|---|
| |