Gene Sala_1328 details

Gene Information

• Locus tag: Sala_1328
• ID: 4080999
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sphingopyxis alaskensis RB2256
• Kingdom: Bacteria
• Replicon accession: NC_008048
• Strand: +
• Start bp: 1386101
• End bp: 1391209
• Gene Length: 5109 bp
• Protein Length: 1702 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 638009691
• Product: hypothetical protein
• Protein accession: YP_616375
• Protein GI: 103486814
• TIGRFAM ID: [TIGR01451] conserved repeat domain

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.191711
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCGATCC GCGATACATA TTTCGGCCTT TTGAGCGCGC TCGCGGCGGT CGTCCTGATG 
CCCGCGACAC CGGCGGCGCG CGCGCAGGTG ATCAGCAACA CCGCATCCGC CGAATGGACG 
CACGACGGCC AACGCGGCGC GGCGCTGTCG AACCGCGTCG ATGTGACCGT CGTCCCGCGA 
CCATCCGAAC CCCCGCGCAT CGCAACCTAT CGCCTGACGA ATGGCGGCGG CGACCGCTCG 
GTGCCGCTCG CGCCGACGCA ATGCGTCCGC GCGGGGAACG GGACTGTCGG AGCGCTCAGT 
ATCGCGACCG CAGCAACGAT CCCGCTTTCC GGGGTTTATG CCGGAATCTC CACCGCCCCG 
GCCTCGCTTC AGCGCAGCGA CAGCTTTCGG GCAGGTGAAA TGCTCGTCGT CGGCGTGACG 
CTCGCCGCCG CCAACGACGA CCCGCAGGTC CGCGATACCC TGCCCGTCGT GATCGAGCTG 
GAGAATGGCG ACCGCGAATC GATCATCCTC ACCGAAACCA CCGCGAACAG CGGCGAGTTC 
GTCGGTTTCA TCAACACGAT CGGCGTGCCG CCCGCCGTGA CGCAGGGCGA TTGCCGCCTG 
TCGGTCGATC CCGGCGCGGC GCTGACGCTG CGCGTGTCCG ATCTGGGAGA CGCCCGCCTC 
GTCGCACTCG CCACGATCGA CTTCCTCGTC GACCCCTTCG GCATCGTGTT CGACAGCGGC 
GACGGCGCTC CCGTGCCGGG GAGCCGCGTG ACGATCGTCG ACGCCGCAAC GGGCCAGCCG 
GCCGACGTGT TCGGCGACGA CGGCGTCTCG ACTTATCCGT CCAGCGTCAT CACCGGCCAG 
CGCGTCACCG ACTCGGGCGG GACCGTCTAT GACTATCCGG CGGGCGACTA TCGCTTTCCC 
TTCGTCGCGC CCGGCAGCTA CCGCCTCATC GTCGAGCCCC CTGCGCCCTT TGCCGCGCCG 
TCGGCCGCCA GCCCCGCCGA CCTTGCCGCC TTTCGCCGTC CCGACGACGG CCAGCCCTTT 
GCGATCAGCG ACGCAAGCTA TGGCCGCGCC TTCACGCTGA ACAGCCCCGC CCCGGTGCGC 
GTCGACATTC CCGTCGACCA GCCCGGCCTG CCGCTGGTCC TGCGCAAGAC GACCTCAACG 
CAGGTCGCGG TGCCGGGCGA TGTCGTGCAG TATCGGATCG AGGTGGCCAA TCGCGATTCG 
CGGCGGACCA CCGGCGCGGT GACGGTGCGC GACGTCCTGC CCGCCGGAAT GCGCCTGCGC 
GCCGACACGG TGCGTGTCGA CGGCGTTCGC GTCGATGCCG CGGTCGAAGC TGACGGCCGC 
GCCTTCACCG TCACCCTGCC CGGCATTGCC GCCGCGCAGT CGGCGCGGCT AACCTATCTC 
GCCGAAGTCG TCGTCTCGGC GCAGCCGGGC AGCGCGCTCA ACCGCGCGAG CGCGACCGAC 
AATCGCGGAA CGACAAGCAA CGTCGCCGAA GCGACGATCG CGATCAAGCG CGACCAGCTC 
GGCGACCGCA TGACGATCAT CGGCCGCATC ACCGACGGCG GCTGCGCCGT CGATCCGGGC 
AAGGCCGATG GCATCATGGG CGTGCGCGTG ATGCTGCAGG ACGGCAGCTA CACCGTCACC 
GACGAGGACG GCCGCTATCA TTTCGAAGGC GTGCTTCCCG GCCTGCACGT CGTGCAGATC 
GATCCCTCGA CGCTGCCGCT CGACCGCGCG GTCGTCGATT GTGCGCGGAG CACGCAAAGC 
GCCGGCAGCG CGATCTCGCG TTTCGTCGAG GGTCGCGGCG GCGCACTGAA ACGCGCCGAC 
TTCCGCGCCG CCGCCAGCGC CCCGCGCGCC GCGCCCGCCA CGGCGGCGCG TCCGGCAGCG 
ACGCCGCTTT CCGATCCCGA AGCCGCTGGC GCCCATCGCG ACTGGCTCAC CGGGCAGGAA 
CCCGGCATCG GCTGGCTCTT CCCCGCTACC GACCATAATC CGCGCGCCAG GGCGATTCGC 
GCTGCGATCA AGCACGCGCC GGGACAGATC GTCACGCTGC GCGTCAACGG CCAGATCGCC 
GACCCGCTGA CCTTTGAAGG CGTCAGCAAA TCAGCCGACG GCGCCGTGGC GGTCAGCCTG 
TGGCGCGGGC TCGAAATCCG CGAGGGCGAC AACCGCCTGG TCGCCGAAGT GAAGGACGCA 
AACGGCATAA CCGTCGAAAC GCTCGAACGC ACCGTCCATT ATTCGATCAC CCCGATGCGC 
GCCGCGCTGG TCCGGGAAAA ATCGGTGCTC GTCGCCGACG GCGTCACGCG CCCGGTGATC 
GCGGTGCGCC TGACCGACCG CGACGGCAAG CCGATCCGTG CCGGACTGAC CGGCGATTTC 
AGCGTCCCCG CCCCCTATTA TCCGGCGGTC GAAGCCGACG CGCAGCAGGC GCGGCAGCTG 
TCCGGCCTCG AACGCGCACC GCCAGTGTGG AAGGTCGATG GCGACGACGG CATCGCCTAT 
ATCGAGCTGG AGCCGACCAC CGCCTCGGGT ACGCTCGCGA TCGACTTTCT GTTCCGCGAC 
GATCGGGTCA CGCACAAGCA GGTGATCGAA ACCTGGCTCG ATCCCGGCGA CCGTCCGTGG 
ACCGTCGTCG GCTTCGCCGC GGGCACGCTG GGATACAACA CGCTCGATGA CCGGATGGAG 
CCGGTCGCCG AAACGCTCGA CGACCTCAAT GCCGACGCGC GCCTAGCACT CTACGCCAAG 
GGCCGCGTGC GCGGCAAATG GCTGATGACG CTGGCCTATG ACAGCGACAA GGAAGCGGAC 
GATGCGCGCT TCGGCGGCGT GATCGACCCG CGCGCCTATT ACACCATTTA CGCCGACCGC 
AACGAGACGC GCTACGACGC GGCGTCGGTG CGCAAGCTTT ATCTCCGCCT CGAACGCCCG 
CAATTTTATG CGATGTTCGG TGATATCGAA ACGGGGATTT CGGAACCCGA GCTTGCCCGT 
TACCAGCGCG CGCTGAACGG CGGCAAGGCC GAATACCGCG GCCGAAATAT CGCCGCGACC 
GCCTTTGTCG CCGACACCCC CTATCGCTTT CGCCGCGACG AGATTCAGGG CAATGGCCTG 
ACCGGCCCCT ATCAGCTCGG CGCGCGCGAC ATATTGCCCA ACAGCGAGCG GATCGTCATC 
GAAACGCGCG ACCGCCTGCA CAGCGAACGC ATCGTCGAGA GCGTCTCCCT CTCGCGCCAT 
GTCGATTACG ACATCGACTA TCAGTCGGGC ACGATCCGCT TCCGCGCGCC GGTGCTCAGC 
CGTTCGTCCG CCCTCGACCC GCAATTCATC GTCGCCGAAT ATGAAGTCGA TGGCGTCGGC 
CAACGCGTGC TCAACGCCGG CGGCCGCGTC AGCTATCGCT CGACCGACGA AAAGCTGCGC 
GTCGGCGCGA CCGTCATCCA CGACGAGGAT GGCAACGCAA AGACGGACAT CGGCGGCATC 
GACGCCCGTT ATCGCCCCAA TATCGACACC GAAGTGCGCG CCGAACTGGC GGTCAGCGAT 
GCGAAGGCCA TGAACGGCAG CGCTGCCGCC GCTGGAACGG CAAAGGCATG GCTGATCGAG 
GCCGAACATC ATGGCAGCAC CGCCGATTTT CTGGCCTATA TCCGCGAGCG CGAAGCCGGT 
TTCGGCGCCG GGCAGCTCAA TCGCGGCGAG GATGGCACGC GCAAGTTCGG CTTTGACGCG 
CGGCTGCGCG CGACGCGCAC ATTGGCACTG ACGGGCAGCG CGTGGCAGGA AGATTATCCG 
GGCACCGACG CGCGCCGCCG CGCCGCGCGC GCGCTGGTCG AATATGACAA TGGCAGCAGC 
GTCGCCCGCG CCGGGCTGAC GTACGCCGAC GATCGCCTGT CCGACGGCTC GCGCAATCGT 
TCGACCATCG TCCAGCTCGG CGCAACGCAG CGCCTGTTCG CCAAGCGCCT CGAACTCGAC 
GCGCAGACCG AATTTGCGCT GGGCGGCAAG GACGCCAGCG TCGATTTCCC GGCGCGGCAC 
CGGCTCGGCG CACGCTTCGG CATCAGCCGC GACGTCAATC TCGTCGGCAG CTATGAAATC 
GCCGATGGCG ATACGGTCCG CGCGCGCACC GCGCGGCTCG GCTTCGACCT GACGCCGTGG 
GTCGGCGCGC GCCTGCTCGC GACCGCGAAC CGGCAGGACA TCGGCGAATA TGGCCCGCGC 
AGCTTCGCCG CTTATGGGCT GTCGCAGTCG CTGAGGCTCG GCGAACATCT GTCGGTCGAT 
GTTTCGGTCG ACGGCAATCG CACGATCGGC GGCATCAGCG CGCGCGACGT ACTGAACGCT 
CAACAACCGG TCGCGTCGGG CGGCTTCCTC GGCGGCAATG GCACACTGAC CGAGGATTTC 
CTGGCGATCA GCACCGGCGC AACATACCGC GCCGACCGGT GGACGCTCAC CGGCCGCGCC 
GAATATCGCG ACGGCGAACT CGCCAATCGT TACGGCCTGA CGCTCGGCGG GCTGCGCCAG 
CTTGGCGAAG GCCGCGCCCT GGGCGCGCTG TTCACCTATG CACAGGCGAG CGGCAGCGGC 
ACGGTGCCGA CGACCGAAGT GATCCAGTTC GAAATGAGCT GGGCGCACCG CCCCGCCGAT 
TCGCGGATTT CGTGGCTGGG CAAGGGCGAG TTCCGGTCGG ACAGGGTGCG CGACGCCGTT 
GCCGGACAGG CCGGGCCGAT CGGCGGCGCG CTGACGATCG ACGGCGATGC GACGAGCCGC 
CGCCTGCTGG GCAGCCTGTC GGTAAACTGG ACGCCGCTTG GTGAGCGCGG CGAAGGCGGC 
ATGTGGTACG AGCGTGCCGA GTTCGGCGTC TTCTGGGGCA CGCGCTATAA TTTCGACCGC 
TTCGGCGCCG ATGATGTGAA GGGCTGGTCG AACCTGATCG GCGCCGACGT CCGCGTGGCC 
CTCGGCGAGC ATGTCGATGT GGGCGCGTCG GGCACCATCC GCGTCGGCAC CGATGCCGAT 
ACCGTCAGCT GGGCAGGCGG GCCGACACTG ACGCTGGCGC CGATGAAGAA TGCGAACATC 
ACCTTGGGCT ATAATTTCGC CGGCTTCCAC GACCGCGATT TCGAGGATGC GCGCTTTTCG 
CGATCGGGCG CCTATGTCAC CTTCAAGCTG AAGTTCGATC AGACGAGCTT TGCGGGGTTG 
GGGCTGTAG 

 

Protein sequence

MAIRDTYFGL LSALAAVVLM PATPAARAQV ISNTASAEWT HDGQRGAALS NRVDVTVVPR 
PSEPPRIATY RLTNGGGDRS VPLAPTQCVR AGNGTVGALS IATAATIPLS GVYAGISTAP 
ASLQRSDSFR AGEMLVVGVT LAAANDDPQV RDTLPVVIEL ENGDRESIIL TETTANSGEF 
VGFINTIGVP PAVTQGDCRL SVDPGAALTL RVSDLGDARL VALATIDFLV DPFGIVFDSG 
DGAPVPGSRV TIVDAATGQP ADVFGDDGVS TYPSSVITGQ RVTDSGGTVY DYPAGDYRFP 
FVAPGSYRLI VEPPAPFAAP SAASPADLAA FRRPDDGQPF AISDASYGRA FTLNSPAPVR 
VDIPVDQPGL PLVLRKTTST QVAVPGDVVQ YRIEVANRDS RRTTGAVTVR DVLPAGMRLR 
ADTVRVDGVR VDAAVEADGR AFTVTLPGIA AAQSARLTYL AEVVVSAQPG SALNRASATD 
NRGTTSNVAE ATIAIKRDQL GDRMTIIGRI TDGGCAVDPG KADGIMGVRV MLQDGSYTVT 
DEDGRYHFEG VLPGLHVVQI DPSTLPLDRA VVDCARSTQS AGSAISRFVE GRGGALKRAD 
FRAAASAPRA APATAARPAA TPLSDPEAAG AHRDWLTGQE PGIGWLFPAT DHNPRARAIR 
AAIKHAPGQI VTLRVNGQIA DPLTFEGVSK SADGAVAVSL WRGLEIREGD NRLVAEVKDA 
NGITVETLER TVHYSITPMR AALVREKSVL VADGVTRPVI AVRLTDRDGK PIRAGLTGDF 
SVPAPYYPAV EADAQQARQL SGLERAPPVW KVDGDDGIAY IELEPTTASG TLAIDFLFRD 
DRVTHKQVIE TWLDPGDRPW TVVGFAAGTL GYNTLDDRME PVAETLDDLN ADARLALYAK 
GRVRGKWLMT LAYDSDKEAD DARFGGVIDP RAYYTIYADR NETRYDAASV RKLYLRLERP 
QFYAMFGDIE TGISEPELAR YQRALNGGKA EYRGRNIAAT AFVADTPYRF RRDEIQGNGL 
TGPYQLGARD ILPNSERIVI ETRDRLHSER IVESVSLSRH VDYDIDYQSG TIRFRAPVLS 
RSSALDPQFI VAEYEVDGVG QRVLNAGGRV SYRSTDEKLR VGATVIHDED GNAKTDIGGI 
DARYRPNIDT EVRAELAVSD AKAMNGSAAA AGTAKAWLIE AEHHGSTADF LAYIREREAG 
FGAGQLNRGE DGTRKFGFDA RLRATRTLAL TGSAWQEDYP GTDARRRAAR ALVEYDNGSS 
VARAGLTYAD DRLSDGSRNR STIVQLGATQ RLFAKRLELD AQTEFALGGK DASVDFPARH 
RLGARFGISR DVNLVGSYEI ADGDTVRART ARLGFDLTPW VGARLLATAN RQDIGEYGPR 
SFAAYGLSQS LRLGEHLSVD VSVDGNRTIG GISARDVLNA QQPVASGGFL GGNGTLTEDF 
LAISTGATYR ADRWTLTGRA EYRDGELANR YGLTLGGLRQ LGEGRALGAL FTYAQASGSG 
TVPTTEVIQF EMSWAHRPAD SRISWLGKGE FRSDRVRDAV AGQAGPIGGA LTIDGDATSR 
RLLGSLSVNW TPLGERGEGG MWYERAEFGV FWGTRYNFDR FGADDVKGWS NLIGADVRVA 
LGEHVDVGAS GTIRVGTDAD TVSWAGGPTL TLAPMKNANI TLGYNFAGFH DRDFEDARFS 
RSGAYVTFKL KFDQTSFAGL GL