| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1183 |
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| Symbol | |
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| ID | 4080831 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 1221629 |
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| End bp | 1223395 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638009544 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_616232 |
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| Protein GI | 103486671 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.448186 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGATTG TGACCAGATT CCTGTTTTCC TGCGCCGCTG CGACGGTCGC AATTGCCGCC
GTTCCGGCGA TGGCAGCCGA TGCCGATGGT CCCCGTTTCG CCGCAGCGCC GCAGACGGTG
CCCGGCATAT TGTCGGCGAA GCAGAAACAG CTTTACACGC AAATCCTTGC GGCGATCCGC
GCCGAACGAT GGAGCGACGC CCGAACGCTG CTCGACAGCG CCGACGCGGA GCCCCTCACC
GATTTCCTGC GTGCCGAACT GCTGGTCGCC GCGAACAGCC CGCGCGCCGA AGTCGCCGAC
ATCATGCCGA TTCTCGCGCG GTCGCCATTT TTGCCGCAGG CCGCCCAGCT TGGTCGGTTG
GCGGCAAAGC GCGGCGCGAC CGACATTCCG GCGCTTCCCG CCGAAACGCG CCTCGCCTGG
GCCGGTAGCG CGCCGCGCCG CCTCGGCGCC GACGCCGTGA ACGGCGATCC GGTTGCCGCC
AGCCTGGCGC GCACAATCCC CGATCGAATC AAGAATGACG ATCCTGCGGG CGCCGAAGCC
CTGCTCAACG CGGTCATCGA CCAGCTGAGT CCCGAAGCGC GGGCCGAATG GCGGCAAAAG
GTCGCCTGGT CCTATTATAT CGAGAATGAC GACCGCAACG CGCTCCGGCT CTCGCTCGCC
TGCACCGCCG ATGGCGGGCC CTGGGCGACG CAGGGCGCCT GGGTGCAGGG CCTCGCGGCA
TGGCGGCTGA ACGATTATCG CACCGCGCTC GCTGCCTTCG ATCGCGTGGC CAGGGAAGCC
CCCGACAGCG AATTGCGCGC CGCGGCTCAT TATTGGGCCG CCCGCGCCGC CGTCGCGGCC
GGCGAACCCG CGGCGGTCCA GTCGCGCCTC CGCGCGGCTG CGGCCAATGA GGAAACGCTT
TACGGCCTGC TTGCGTCCGA GACGCTCGGC GTCGAGCCAA AGAGCCAGCG CGAGGCGCTC
CGTGCCGACC GCAGCGCATG GCGCGCGCTT CAGGGGCTCC CCAATGTAAG GCTCGCGATG
GCGCTCGCCG AGATCGGCGA GGAAAACTAC GCCGGTGAAG CGCTACGCCA CCAGGCGCGC
ATCGGCAATC CCGATCATCA CGACGAACTG ATCGCAATGG CGGGCGCGCT CAGCCTGCCC
GAAACGCAGC TCTACCTCGC GCACAACACG CCGCACGGCC GCAAGCCCGC CCCGACCGCG
CGGTATCCGC AACCGAAGTG GGAACCGAGC GGCGGCTGGC GCGTCGATCC CGCGCTTGTT
TTTGCCCATA CGCTTCAGGA ATCGCGTTTC CAGCGCACCG CGGTCAGCAG CGCGGGTGCA
ACGGGACTGA TGCAGGTACG TCCGGGCACC GCGCGCGACA TCGTCCGATG GGAGGGTGCG
GTCGCGGCGC TCGACGATCT CAAGACACCT GCGGCGAACA TGGACCTCGG CCAACGTTAT
CTGCAGTATC TGAGCCGCGA GCCCGCGACG GGCGGCCTGC TGCCCAAGGT CATCGCGGCC
TATAACGCCG GTCCCGCTCC GGTCGCGCGC TGGCAGAGCG AAATTCGCGA TAATGGCGAC
CCGCTGCTCT ACATCGAATC GATCCCCTAT TGGGAAACGC GCGGCTATGT CGGCATCGTG
CTGCGCAACT ACTGGATGTA CGAAGCACAG CAGGGCAAGC CGTCGGACAG CCGCGCGGCG
CTGGCGCAGG GCAAATGGCC CCGCTTTCCC GATGGCAAGG ATCGCACGCG CCTGACCTGG
GCTGGAGGCC TCGCCGATGC CGATTGA
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| Protein sequence | MPIVTRFLFS CAAATVAIAA VPAMAADADG PRFAAAPQTV PGILSAKQKQ LYTQILAAIR
AERWSDARTL LDSADAEPLT DFLRAELLVA ANSPRAEVAD IMPILARSPF LPQAAQLGRL
AAKRGATDIP ALPAETRLAW AGSAPRRLGA DAVNGDPVAA SLARTIPDRI KNDDPAGAEA
LLNAVIDQLS PEARAEWRQK VAWSYYIEND DRNALRLSLA CTADGGPWAT QGAWVQGLAA
WRLNDYRTAL AAFDRVAREA PDSELRAAAH YWAARAAVAA GEPAAVQSRL RAAAANEETL
YGLLASETLG VEPKSQREAL RADRSAWRAL QGLPNVRLAM ALAEIGEENY AGEALRHQAR
IGNPDHHDEL IAMAGALSLP ETQLYLAHNT PHGRKPAPTA RYPQPKWEPS GGWRVDPALV
FAHTLQESRF QRTAVSSAGA TGLMQVRPGT ARDIVRWEGA VAALDDLKTP AANMDLGQRY
LQYLSREPAT GGLLPKVIAA YNAGPAPVAR WQSEIRDNGD PLLYIESIPY WETRGYVGIV
LRNYWMYEAQ QGKPSDSRAA LAQGKWPRFP DGKDRTRLTW AGGLADAD
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