Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1157 |
Symbol | |
ID | 4080863 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1190798 |
End bp | 1191778 |
Gene Length | 981 bp |
Protein Length | 326 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638009518 |
Product | LysR family transcriptional regulator |
Protein accession | YP_616206 |
Protein GI | 103486645 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.329049 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGACCAT CCTGGCGGCG AATTTTAATC GGCTGCCTTG TTCAAAGTCG CCCAATAAAT CCCTACACTC GATCAATGCA AAATTACCTG CCTTCACTCA AACAGATGCA ATATCTCGTG GCGCTGCACG AACATGGTCA TTTCGGCCGC GCCGCCGATG CGTGCAATGT CACCCAGTCG ACGCTGTCGG CAGGCATCCG CGAACTGGAA ACCTTGCTGG GGCAAACGCT CGTCGAGCGC ACGCGCCGCG TCGTGCGCTT CACCGCGCTC GGCAACAAGA TCGTCGAGAA GGCGCACCGC GTGCTGCGCG AGGCCGAGGA GCTTGCCGAC ATGGCCGCCG CTGCATCGGC GCCGCTCGTT GGCGAACTGC GCATGAGCGT CATCCCGACG ATCGCGCCCT TCCTGCTCCC CGGCCTCCTT CCCCGGCTCC GCAAGGAGCG TCCGTCGCTC AAGCTGTTCC TGCGCGAAGA GCCAAGTGCG CAGGCGTGCG AGTCGCTTCA CCACGGCGCC GTCGATTGCG TGCTGCTCGC GCTCCCCTAT GCGTGCGGCG ACGTCGAAAG CGAAGAATTG TTCGACGATG CGCTGTTCGT CGCCTTTCCC GGCGATCAGT CCGAAGACCT GCCCGCGACG GTCAGCGCCG ACCAGATCGA CCCTGCCCAG ATGTTGATGC TAGAGGACGG GCATTGCCTG AAAGATCACG CACTCGCGGC GTGCAACCGT CCCGAACTGC GTGCCGGCGC GCGGATGATG GGCACTTCGC TGCACACGCT GGTGCAGATG GTCGACAACG GCCTTGGCAT CACCATGCTG CCGCAAATGG CGATCGAGGC GGGCATCCTC GATCACACCG ACATCGACAC GCGCCCGCTC GATTCGGCGC ATGACTGGCG AACGATCGCG CTCGTCTGGC GCAAGGGCAG CCCACGCGCC GAGGAGTTCC GCATGCTCGC CGATATTTTC AGGAAGCATC AGGCGGGATA G
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Protein sequence | MRPSWRRILI GCLVQSRPIN PYTRSMQNYL PSLKQMQYLV ALHEHGHFGR AADACNVTQS TLSAGIRELE TLLGQTLVER TRRVVRFTAL GNKIVEKAHR VLREAEELAD MAAAASAPLV GELRMSVIPT IAPFLLPGLL PRLRKERPSL KLFLREEPSA QACESLHHGA VDCVLLALPY ACGDVESEEL FDDALFVAFP GDQSEDLPAT VSADQIDPAQ MLMLEDGHCL KDHALAACNR PELRAGARMM GTSLHTLVQM VDNGLGITML PQMAIEAGIL DHTDIDTRPL DSAHDWRTIA LVWRKGSPRA EEFRMLADIF RKHQAG
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