Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1010 |
Symbol | |
ID | 4081698 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 1036125 |
End bp | 1038434 |
Gene Length | 2310 bp |
Protein Length | 769 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638009370 |
Product | TonB-dependent receptor |
Protein accession | YP_616060 |
Protein GI | 103486499 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.247668 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.797114 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGGGAG GGAGAGTGTT TATGAAAACG CATTTGATCG CGCTGTTTGC GGCATCCGCG CTTGTCAGCC CTGTTGTCGC CTTTGCCCAG GAAACGCCCG CCGCCGACGA TCAGGGGGGG CTCGAGGAAA TCATCGTCAC CGCGCAAAAA CGCGCCGAGG GGCTGTCCGA CGTGCCGATC TCGATCTCAG CGGTCAGCGG CAAGCAGGTC GAAAATTACG GGCAGACCAA TCTTGAACAA ATCTCGTCCT CGGTCCCGAA CCTCAAGATC ACCCAGACGG CGATCGCCAA CCGTATCGCG ATTCGCGGCA TCGCATCGGG CGACAACAAG GGGTTCGAAC AATCGGTCGC GATGTTCGTC GACGGCGTCT ATTACGGTCG CGACCAGCTC TCGCGCCTGC CGCTCGTCGA CATGGAGCGC GTCGAGGTGC TGCGCGGGCC GCAGCCGACC CTGTTCGGGA AAAATGCCAT TGCCGGCGCG GTCAATATCA CGACGCGCGG CCCGACCGAC ACATTCGAAG GGTCGGTCAG CGGTCTTTAC GAGTTCAACC ACAAGGAATT GCAGCTGACC GGCGTGCTGT CGGGACCGCT GAGCGACGGC GTCGAGGCGC GCGTCGTGGG CTATCATCGC TCGATGGACG GCTATTTCTA TAATCAGGAG CTCGATCGCG ACGAACCCAA TGTCGATGAG TATTATTTTC GCGGCAAGGT CGAACTGGAC AAGGGCGGAC CGTTCGCGGC CGAACTGAAA CTGGAATATG CCGACTTTGA AATGAAGGGC CAGCCGCGCG ACGTCTTCGG CGCGGTCGGC AATTACAACG CGGTTTTCCA GGGTCCCTTC TTCGTCAGCA CCGACCCCGA TTTTGTCCGC GAGGACAATG GTTATGAAAG CCGAAACAAG GTGTTCGGTG CCACACTTAA TGTCGACTTC GAAATCGGCG ATCACACGTT GACCGCCGTG TCGGCCTTGC TCGATTACAA GACGCGCGAA ATTGTCGACG TCGATTTTTC GGGCATCAGC TTCCTTGATG GCACCAATTT GCGTGAGGAT TACCGCCAGT TCAGCCAGGA ACTGCGGCTG ACCTCGCCGG GTGGCGAGGT GTTCGACTAT ATCGCCGGGG TCTATTATCA GCACGCCAAA CTCGACGTGC AGGATTTCAC CCTGTTCAAT CCGACCTTCC TCGCGCTCGG CGCGCCCTTC AATGCGTTGG GCGACACCAG CAACGACCGC GATTACACGC AGAAATCCGA TCTGATCTCC GCCTTTGCGC AAGGTGAATT ATCGGTCACC GACCAGCTGC GCATTACTGC GGGCGCGCGG TTCAACCATG AGAAGAAGAG CGGCAGCCGC AGCCTGGCGA TCGTCCAGGG GCCGCTCAGC ACGGCGCCCG CAGCGGTCGT TGCGGCCGTG TTCCGGGCGC TCAATATCGA AACGCACAGC ATCTCCGGCA AGATCAGCGA AGACAGCTTC AATCCGATGG TCAACGTCCA GTATGACGCG ACCGATGACC TGATGGTCTA TGCCTCCTAT GCCAAGGGCA CGAAGGCGGG CGGTTTCGAC ATAAGGTCGA ACTCGCTGCC GACCTCGACG ACCGTGGCGC GGCCCGGCGC CTTTGTCTTC GAGGACGAAA GCGCAGACAA TTTCGAGGCC GGCCTGAAAT ATAAAGGGCG CAATGTCGCT TTCAACGTCT CGCTCTATCG CACCGATTAC AAGGATCTTC AGGTCAATAT CTTCGACGGC ACGCTGAACT TCAACGTCCG CAACGCTGCT GAAGCGCGGA CGCAGGGGGT GGAGGCCGAT TTCCGCGCGG CGCTCGCGCC GGGGCTGACG GTCAGCGGCG CGGTCGCCTA TCTCGACTTC AAGTTCACCA ATTTCACCGA GGGCCAATGT TTTTATCTGC AGGTGCCCGG ACCGAATGGC CTGTGCGATT ATTCCGGCAA GCGAAACGCC TTGAGCCCCG AATGGTCGGG CAATTTGAAC CTCGACTACA CGACGCCGGT GACGAACGAG ATGAAGGTCG CGCTCAACAT CAACGCCGAT TTCTCCTCTT CCTATATCGC CGCGGTAAAC CTCGATCCGC GTACGCATCA GGACGGATAT GTAAAGCTGG GCGCGCGGTT TGCGCTGGCC GACGTTGATG ATCGCTGGGA GGTCGCGCTG ATCGGCCGTA ACCTCACCAA CCAGCGGATA TTGCAGACGG CGAGTTCGAT GCCGCTCGCC ACGACGATCA CGCGAGGGGC GGGCAATGCC TATAACGGCA TCGTCGACCG CCCGCGCACG ATCGCGGTGC AACTGACGGG GCGCTTTTGA
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Protein sequence | MVGGRVFMKT HLIALFAASA LVSPVVAFAQ ETPAADDQGG LEEIIVTAQK RAEGLSDVPI SISAVSGKQV ENYGQTNLEQ ISSSVPNLKI TQTAIANRIA IRGIASGDNK GFEQSVAMFV DGVYYGRDQL SRLPLVDMER VEVLRGPQPT LFGKNAIAGA VNITTRGPTD TFEGSVSGLY EFNHKELQLT GVLSGPLSDG VEARVVGYHR SMDGYFYNQE LDRDEPNVDE YYFRGKVELD KGGPFAAELK LEYADFEMKG QPRDVFGAVG NYNAVFQGPF FVSTDPDFVR EDNGYESRNK VFGATLNVDF EIGDHTLTAV SALLDYKTRE IVDVDFSGIS FLDGTNLRED YRQFSQELRL TSPGGEVFDY IAGVYYQHAK LDVQDFTLFN PTFLALGAPF NALGDTSNDR DYTQKSDLIS AFAQGELSVT DQLRITAGAR FNHEKKSGSR SLAIVQGPLS TAPAAVVAAV FRALNIETHS ISGKISEDSF NPMVNVQYDA TDDLMVYASY AKGTKAGGFD IRSNSLPTST TVARPGAFVF EDESADNFEA GLKYKGRNVA FNVSLYRTDY KDLQVNIFDG TLNFNVRNAA EARTQGVEAD FRAALAPGLT VSGAVAYLDF KFTNFTEGQC FYLQVPGPNG LCDYSGKRNA LSPEWSGNLN LDYTTPVTNE MKVALNINAD FSSSYIAAVN LDPRTHQDGY VKLGARFALA DVDDRWEVAL IGRNLTNQRI LQTASSMPLA TTITRGAGNA YNGIVDRPRT IAVQLTGRF
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