| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0979 |
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| Symbol | |
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| ID | 4079978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 1003132 |
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| End bp | 1005141 |
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| Gene Length | 2010 bp |
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| Protein Length | 669 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638009339 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_616029 |
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| Protein GI | 103486468 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0235491 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCACGA AGAACGAAGC CGATACCGAC GCCCCGCTGA TCGACCTGAA CGAGGCCGAC
GTCAAAAAAC TGATCGCGCG CGGCAAGAAG CGCGGTTACC TGACCTATGA CGAGCTCAAT
GCGGCGCTGC CGCAGGACGA AATGTCGTCC GAGCAGATCG AGGATATCAT GTCGGCCATC
TCCGACATGG GCATCAACAT CGTCGAAAGC GACGAGGATG TGCAGGAAGA GGCCGAGCAG
GAGGTCGACG ACGAGGTCGA TGTTTCGGCA GGCACCGGGT CGGTTTCGAA CCCCGCGATC
GAAAAGAAGA AGGAAACGGT CGATCGCACC GACGATCCCG TGCGCATGTA TCTGCGCGAA
ATGGGTGCGG TCGAATTGCT GTCCCGCGAG GGTGAAATCG CGATCGCGAA GCGCATCGAG
GCGGGCCGCG ACACGATGAT CCTCGGGCTT TGCGAAAGCC CGCTGACCTT CAACGCGATC
ATCGAATGGT CGAACGCGCT CAACAATGGC GACATGCAGC TGCGCGAGAT CGTCGACCTC
GAAGCGATGC TGTCGAAAGA TCCGGCGCCT GAAAATCTCG ACGAGGAAGG CGCCGAGGAC
GGCGAGATCA GCGAAAAGAC CGCCGGCGTC TCGTTCAAGG ACGAGGATGA GGTCGAGGAA
GAGCCTGCCG CCGACGGCGA CGACGAGGAT GGCGAAGGCA CATCGGGCAA GCGTGAAAGC
TTCGACGACG ATGACGAGGA CAATACGCTG AGCCTCGCCG CGATGGAGGA ATTGCTCAAG
CCCGACGCGC TTGAGAAGTT CGCGAACATT ACCAAAAGCT TCAAGGCGTT CCAGAAGCTT
CAGGAAGCCC GGCTCGAAGC GCTGTCGAGT GGCGAGGAGT TTCCGGCGGC GTCGGAAAAG
AAATATCACA AGCTGCGCGA GGAACTCACC GCACAGGTCG AGAGCGTGCA GTTCCATGGC
ACCAAGATCG AATATCTGGT CGACCAGCTC TACAGCTACA ACCGCCGCCT GACCGCGCTC
GGCGGCCAGA TGCTGCGCCT TGCCGAGCGT CACAAGGTCC CGCGCAAGTC GTTCCTCGAC
CATTATGTCG GCCGCGAGCT CGAAGAAAAC TGGCTTGAGG AAGTCGCCGG CATCGACAAG
AAATGGGCGG CGTTCGCCGA GAATGAGGCC GCCGCGGTCG ATCGCATCCG CGTCGAGATC
AGCGAGATCG CGCAGGCCGC GGGCATGAGC CTGACCGAGT TCCGCCGCGT CGTGAACATG
GTGCAGAAGG GCGAGCGCGA GGCGCGCATC GCCAAGAAGG AAATGGTCGA GGCCAACCTG
CGCCTCGTCA TTTCGATCGC CAAGAAGTAC ACGAACCGCG GGCTGCAGTT CCTCGACCTC
ATTCAGGAAG GGAACATCGG CCTGATGAAG GCGGTCGACA AGTTCGAATA TCGCCGCGGC
TACAAGTTCA GCACCTATGC GACCTGGTGG ATCCGCCAGG CGATCACCCG CTCGATCGCC
GATCAGGCGC GTACGATCCG TATCCCCGTC CATATGATCG AGACGATCAA CAAGCTGGTG
CGCTGCAGCC GCCAGTTCCT CCACGAAAGC GGCCGCGAGC CGACCCCGGA GGAAATGGCC
GAGCGGCTGT CGATGCCGCT CGAAAAGGTC CGCAAGGTGA TGAAGATCGC CAAGGAGCCG
ATCAGCCTCG AAACGCCGAT CGGCGACGAG GAAGACAGCC ACCTCGGCGA TTTCATCGAG
GACAAGAATG CGGTGATACC GGTCGATGCC GCGGTGCAGT CGAACCTCAA GGAAACCGTC
ACCCGCGTCC TTGCATCGCT CACCCCGCGC GAGGAACGCG TGCTGCGTAT GCGCTTCGGC
ATCGGCATGA ACACCGACCA TACGCTCGAA GAAGTGGGTC AGCAGTTCAG CGTGACCCGC
GAACGCATCC GCCAGATCGA GGCAAAAGCC CTCCGCAAGC TCAAGCACCC GTCGCGGTCG
CGCAAGATGC GGTCGTTCCT TGACCAGTAG
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| Protein sequence | MATKNEADTD APLIDLNEAD VKKLIARGKK RGYLTYDELN AALPQDEMSS EQIEDIMSAI
SDMGINIVES DEDVQEEAEQ EVDDEVDVSA GTGSVSNPAI EKKKETVDRT DDPVRMYLRE
MGAVELLSRE GEIAIAKRIE AGRDTMILGL CESPLTFNAI IEWSNALNNG DMQLREIVDL
EAMLSKDPAP ENLDEEGAED GEISEKTAGV SFKDEDEVEE EPAADGDDED GEGTSGKRES
FDDDDEDNTL SLAAMEELLK PDALEKFANI TKSFKAFQKL QEARLEALSS GEEFPAASEK
KYHKLREELT AQVESVQFHG TKIEYLVDQL YSYNRRLTAL GGQMLRLAER HKVPRKSFLD
HYVGRELEEN WLEEVAGIDK KWAAFAENEA AAVDRIRVEI SEIAQAAGMS LTEFRRVVNM
VQKGEREARI AKKEMVEANL RLVISIAKKY TNRGLQFLDL IQEGNIGLMK AVDKFEYRRG
YKFSTYATWW IRQAITRSIA DQARTIRIPV HMIETINKLV RCSRQFLHES GREPTPEEMA
ERLSMPLEKV RKVMKIAKEP ISLETPIGDE EDSHLGDFIE DKNAVIPVDA AVQSNLKETV
TRVLASLTPR EERVLRMRFG IGMNTDHTLE EVGQQFSVTR ERIRQIEAKA LRKLKHPSRS
RKMRSFLDQ
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