| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0897 |
|---|
| Symbol | |
|---|
| ID | 4082797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 905739 |
|---|
| End bp | 906521 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638009258 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_615948 |
|---|
| Protein GI | 103486387 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0717939 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAGGC TGGCTGGCAA GGCCGCGATC GTAACCGGCG CGTCAAAGGG GATGGGGCGG
CATTTCGTTG CCGCGCTGGT GGAAAACGGG ATGCGTGTCG CCTGCCTTGC GCGGCCTTCC
GACGAACTGG CATCGCTGGC CGACGATTTC GGGGAAGCGG TGCTGGCTCT GCCTTGTGAC
GTTACGGTTC CCGAAGCCGT CGATAGAGCC GTTGCACGGG CGGTGGAGGC GTTCGGCCAC
CTCGACGTGG TGATTGCCAA TGCCGCCGTC TATCACCCCT TCGCTTTCGA GCAAGGCAGC
GACGACATGA TCCGCAACCA TGTCGATATC AATGTCCTGG GGGTTGCCTG GCTGATCCGC
GCCAGCATTC CGCACCTGCG CGCCACCGGG GGACAGATCG TCGCGATCAG CAGCGAATCG
GTGCGAATGC CCTTTCCGAT GCTGGCGCTT TACGCTGCGA CAAAGGCAGC AGTCGAAACC
CTGTGCAACG GGCTGCGCGA CGAGCTGCGA TCCGACGATA TTCGCGTCAC CATATTGCGT
TCGGGTTCGG TGAAGGGCGG TTCGGGCGGA AAAGCCTGGT CACAGGAAAC CGTCGCCGCC
TTTTACAAGA AAATCGTCGA AACCGGCCAC GCTGCAATGA GCGGGGACTC GGCGACCCCG
GAATCGATGG CCGAAGCCTT GCTGGCCGTC ATCGGTCTGC CAGCCGACAT CGGCGTCGAT
CTCATCGAGG TGCGCGCCGC ACAGGAAGGG GCGCCCGAGG GAGCAAAGCA GGTAGCCGAA
TAG
|
|---|
| Protein sequence | MERLAGKAAI VTGASKGMGR HFVAALVENG MRVACLARPS DELASLADDF GEAVLALPCD
VTVPEAVDRA VARAVEAFGH LDVVIANAAV YHPFAFEQGS DDMIRNHVDI NVLGVAWLIR
ASIPHLRATG GQIVAISSES VRMPFPMLAL YAATKAAVET LCNGLRDELR SDDIRVTILR
SGSVKGGSGG KAWSQETVAA FYKKIVETGH AAMSGDSATP ESMAEALLAV IGLPADIGVD
LIEVRAAQEG APEGAKQVAE
|
|---|
| |