| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0789 |
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| Symbol | nrdR |
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| ID | 4080433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 796358 |
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| End bp | 796825 |
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| Gene Length | 468 bp |
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| Protein Length | 155 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638009149 |
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| Product | transcriptional regulator NrdR |
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| Protein accession | YP_615842 |
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| Protein GI | 103486281 |
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| COG category | [K] Transcription |
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| COG ID | [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains |
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| TIGRFAM ID | [TIGR00244] transcriptional regulator NrdR |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0165247 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0364138 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGGTGTC CTTATTGCGG CCATGAAGAC AGCCAGGTCA AGGACAGCCG TCCGACCGAA
GATGGCGCGG CGATCCGCCG CCGCCGCCAG TGCGAGGATT GCGGCGCGCG CTTCACGACG
TTCGAGCGCA TCCAGCTGCG CGAGGTCGTG GTGATCAAGG CCGGCGGGAC GCGCGAGCCG
TTCGATCGCG AAAAACTGAT GCGCAGCGTC CAGATCGCAT GCCGCAAGCG CCCGATCGAC
GGCGCGCGGA TCGAACGGCT GGTATCGGGC ATCCAGCGCC AGCTCGAAAC ATCGGGCGAG
AATGAGGTGC AGGCATCGCA GATCGGCGCG ATGGTGATGG AAGCGCTCAA GGGCTTCGAC
AATGTCGCCT ATATCCGCTT CGCCAGCGTC TACCGCGATT TCACCGAAGC CAGGGATTTC
GAAGAGTTCG CCTCGACGAT CACCGAGGCG GCGCGGCCGA TCAAATGA
|
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| Protein sequence | MRCPYCGHED SQVKDSRPTE DGAAIRRRRQ CEDCGARFTT FERIQLREVV VIKAGGTREP
FDREKLMRSV QIACRKRPID GARIERLVSG IQRQLETSGE NEVQASQIGA MVMEALKGFD
NVAYIRFASV YRDFTEARDF EEFASTITEA ARPIK
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