| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0349 |
|---|
| Symbol | |
|---|
| ID | 4081047 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 353461 |
|---|
| End bp | 355044 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638008708 |
|---|
| Product | cysteinyl-tRNA synthetase |
|---|
| Protein accession | YP_615405 |
|---|
| Protein GI | 103485844 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0215] Cysteinyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00435] cysteinyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.348008 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.382318 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGGCG GCATGACCGA CACGCCCGCC TCCCCGCCGC TGAGGCTGTT CAACAGCCTG
ACGCGCCGCC TCGAAACCTT CGAGCCCGTC CACCCCGGCG AAGCGCGCGT CTACAGCTGC
GGGCCGACCG TCTACAACTA TCCGCATATC GGCAATATGC GCGCCTATGT CTTTGCCGAC
ACGCTGGGCC GCACCCTGTC GTTCAAGGGA TACAAGCTCA CCCATGTCAT CAACATCACC
GATGTCGGTC ATCTCACCGA CGACGCCGAT GCGGGGGAGG ACAAGCTGGA AAAGGCCGCG
GCCGAAAAGG CGCAGTCGAT CTGGGACATC GCGCGCCATT ATACCGAGGC CTATTGGGCC
GACGTGAAGG CGCTGAACAT CCGAGGCCCG ATGAAGGCGG GCAAGCCCGA GGCCGCGCAC
TGGTCGATCG CCACCGATTA TGTGCCGCAG ATGATCGAGT TCGCCAAAGC GATCGCCGAC
AAGCATTGCT ATGAACTCGA CAGTGGCCTC TATTTCGACA CCTCGACCGT CGCCGATTAC
GGACGCCTTG CGCGCCATGC GACCGACGAG GGCGAGAGCC GGATCGACCC TGTCGACGGC
AAGCGCCATC CCGCCGACTT CGCCATCTGG CGCAAGACCC CGCCGGGCGA GACGCGCCAG
ATGGAGTGGG ACAGCCCATG GGGCAAAGGT GCGCCCGGCT GGCACCTCGA ATGCTCGGTG
ATGTCGGAGG CTTTGCTCGG CTTCCCCTTC GACATCCACA CCGGCGGCAT CGACCACCGC
GAGATTCATC ATCCGAACGA AATCGCACAG AACCAGGCGC GCAGCTGCTC GACCGACAGC
GGCGCGCGCA TCTGGATGCA CAATAATTTC CTCGTCGAAC GCTCTGGCAA GATGAGCAAG
AGCGCGGGCG AGTTCCTGCG CCTGCAACTC CTGATCGACA AGGGCTACCA CCCCCTCGCC
TATCGCCTGA TGTGCCTCCA GGCGCATTAT CGCAGCGAGC TGGAGTTTTC GTGGGAGGGG
CTGGGCGCGG CGCTGACGCG GTTGAAGCGG CTGGTGATGG CGGTCCAGCG CACTAAGGAG
GCTGCCACGC TCTCCGAATG GAAACCGTTC AAAAAATACT TGCGCAGTCC GGGCATGGTT
GATGACTACA TCGACTCCAT CAATGAGACG GATGAATGGT TCGATTTTAC CGGGATACTG
GGCGAATTTG ACGATGCGAT CAGCAATGAT CTAAATACAG CATCGGCCTT CCCGACGTCG
GAAAAACTGG CTTTGACTAA GTTGGTCGAA GAAGCGGTCA CTGACCCGTT TATTCAACTG
GACAATCGCC TTCGCCTCAT TGCTACGATG GACCAAATAT TCGGTCTGCG ACTTCTTGAA
TTGGATCGAA TCGACCTGCG CATCCGCCCC AAAACTGCCA CCATCACCGA ATCCGAAATC
GAAGCCATCC TCACCCGCCG CAAGGAAGCC CGCGCCGCCA AGGACTTCGC GACCTCCGAC
AAACTCCGCG ACGAACTCAT CGCCGCCGGG GTCGAGGTGA TGGACGGCGA CCCGCTCGGC
TGGGACTGGC GGCTGGAGGC ATAG
|
|---|
| Protein sequence | MGGGMTDTPA SPPLRLFNSL TRRLETFEPV HPGEARVYSC GPTVYNYPHI GNMRAYVFAD
TLGRTLSFKG YKLTHVINIT DVGHLTDDAD AGEDKLEKAA AEKAQSIWDI ARHYTEAYWA
DVKALNIRGP MKAGKPEAAH WSIATDYVPQ MIEFAKAIAD KHCYELDSGL YFDTSTVADY
GRLARHATDE GESRIDPVDG KRHPADFAIW RKTPPGETRQ MEWDSPWGKG APGWHLECSV
MSEALLGFPF DIHTGGIDHR EIHHPNEIAQ NQARSCSTDS GARIWMHNNF LVERSGKMSK
SAGEFLRLQL LIDKGYHPLA YRLMCLQAHY RSELEFSWEG LGAALTRLKR LVMAVQRTKE
AATLSEWKPF KKYLRSPGMV DDYIDSINET DEWFDFTGIL GEFDDAISND LNTASAFPTS
EKLALTKLVE EAVTDPFIQL DNRLRLIATM DQIFGLRLLE LDRIDLRIRP KTATITESEI
EAILTRRKEA RAAKDFATSD KLRDELIAAG VEVMDGDPLG WDWRLEA
|
|---|
| |