| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0314 |
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| Symbol | |
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| ID | 4082345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 321266 |
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| End bp | 322132 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 638008673 |
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| Product | type II secretion system protein C |
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| Protein accession | YP_615370 |
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| Protein GI | 103485809 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3031] Type II secretory pathway, component PulC |
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| TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.914338 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACGC TGATGCCCCG ATCGGCCGTT CGGTTGCCGC GCGCGCTGCC GTCCTGGCTG
CGCGTGGGCG GACGTTCGCC GCGGGCGATC TGGCCGCAGC TGCTGGTCGG TCTGCTCGGC
GCGCTGCTCG TGTGGCAGGC GGTACGGCTG CTGTGGGTAT TGCTGACCCC GGTTTCGCCG
CTCGGCGCGT GGCAGCCGCA GACGGCGGCG ATCGCGTCGG CAGCCGAACG ACGCGCGCTG
TTCACGAGCC TCGATCCTTT CTTCCGCGGC GCGGCGCAGG GACCGGCGGC GGCGACGGTC
ACGTCGGCGG GGCTGACGCT TTTCGGCATC AACCTCAACG AAGCGACGGG CGGTGGCTCG
GCGATCATCG CGGGCGAGGA CGGGGTGCAG ACAAGCTATG CCGTCGGCGA CGAAATCGCG
CCGGGGCTGA AGCTCGCCGG CGTTGCTTTC GACCATGTGC TGCTCGATCG CGGCGGCGCG
CGCGAAAGCC TGTTCCTCGA CCAGAGCGGC GCAGCGCCGG TCGCGCGCCC CGCGACGCCG
CTGCCCGCGC CGACGGCAGA GGTTGGTGCT TCGGCGAGCG GCGAACTGAC GGCCGCGGCG
ATCAAGGCGG GGATCGCTTT TGCGCCGCGC ATCGAGGATG GCCGCGTCAC CGGCATCGTC
GTTCAGCCCA CGGGCGACGG CGCGACCTTC CGCGCCGCGG GGCTGCGTCC GGGCGACGTG
ATCCGATCGG TCGGCGGCCG CCCGATCGGG GCGGCGAGCG ATGCCGCCGC GCTTGCCAAC
CAACTCACGC CGGGCGCGCG CATCGCGCTC GAAGTCGAAC GCGGCGCCAG CGTCGTTCCC
GTCGCCATCT TCCTTTCGAA GCAATAG
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| Protein sequence | MATLMPRSAV RLPRALPSWL RVGGRSPRAI WPQLLVGLLG ALLVWQAVRL LWVLLTPVSP
LGAWQPQTAA IASAAERRAL FTSLDPFFRG AAQGPAAATV TSAGLTLFGI NLNEATGGGS
AIIAGEDGVQ TSYAVGDEIA PGLKLAGVAF DHVLLDRGGA RESLFLDQSG AAPVARPATP
LPAPTAEVGA SASGELTAAA IKAGIAFAPR IEDGRVTGIV VQPTGDGATF RAAGLRPGDV
IRSVGGRPIG AASDAAALAN QLTPGARIAL EVERGASVVP VAIFLSKQ
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