| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0258 |
|---|
| Symbol | |
|---|
| ID | 4081206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 259318 |
|---|
| End bp | 260463 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638008616 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_615314 |
|---|
| Protein GI | 103485753 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.148807 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGAAC CTCTCGCCCT TTATGTTCAT TGGCCGTTTT GCGTCAGCAA ATGTCCTTAT
TGTGACTTCA ACAGCCATGT GCGCGACAGC GTCGAACAGG AGGTCTGGCG CGCAGCCCTG
CTCGCGGATT TGCGGCATGA GGCGGCGGTG CTGCCTGGGC GGCGCGTGGC GTCCATCTTT
TTCGGTGGCG GGACGCCCAG CCTGATGCCG GCCGCGACGG TGGCGGCGGT GATTGCCGAG
GCAGCCGCGT TGTGGGGACT GACCGACGAT TGCGAAATCA CGCTCGAAGC GAATCCCAAT
TCGGCCGAAG TCGCCGCCTT CGCCGATCTC GCCGCCGCCG GGGTCAACCG CGTGTCGATC
GGCGTCCAGA GCTTTGACGC GCAAGCGCTT GCGTTTCTGG GCCGCGCGCA CAGCGAGGAT
GAGGCGCGGC GAGCGATTGC GATGGCGCAG GAGCATTTTG CGCGCGTCAG TTTCGACCTG
ATCTATGCGC GGCCGGGACA GACGCTGGCA GCATGGGAAG GCGAACTGGC GGACGCGCTG
GGCTTCGGCA CCGGCCATCT GTCGCTCTAT CAGCTCACCA TCGAGCCGGG GACGCGCTTT
TGGGCGCTCG CGGCGAAGGG TGAACTCACC ATTCCCGATG GCGACGCCGC GGCCGACCTG
TTCGACGCGA CGCAGGCGAT GACGCGCGCC GCGGGCCTGC CGCGCTACGA AGTGTCGAAC
CACGCGCGAC CGGGCGAGGA GAGCCGCCAC AATCTCGCCT ATTGGCGCTA TGCCGATTAT
GCGGGGGTCG GGCCGGGCGC GCACGGGCGG CGGCTGCGGC AGGCGACCGA GCGGCACAGG
AAACCCGAAA ATTTCATCGC CGCGGTGACG CGCAACGGCC ATGGGCTGAA GGTCGAAACC
GACTTGTCCG GCCGCGAGCG CGCGACCGAG GCGATGCTGA TGGGGCTGCG GCTGACCGAA
GGCGTCGATC TGGCGCGGGT CGAGGCGCGG AGCGGGTTGC CGCGCGCGGA TTTTGTCGAT
GCCGACGCGG TGGCGCGGCT TGCCGGGCAG GGGCTGCTGG TCGCGGACGG AGACCGGCTG
GCAGTGACCG GGGCGGGGAT TTTGCTGCTC GACTCGATCC TTTCCGAGGT GGTCGAAACT
CGGTAG
|
|---|
| Protein sequence | MFEPLALYVH WPFCVSKCPY CDFNSHVRDS VEQEVWRAAL LADLRHEAAV LPGRRVASIF
FGGGTPSLMP AATVAAVIAE AAALWGLTDD CEITLEANPN SAEVAAFADL AAAGVNRVSI
GVQSFDAQAL AFLGRAHSED EARRAIAMAQ EHFARVSFDL IYARPGQTLA AWEGELADAL
GFGTGHLSLY QLTIEPGTRF WALAAKGELT IPDGDAAADL FDATQAMTRA AGLPRYEVSN
HARPGEESRH NLAYWRYADY AGVGPGAHGR RLRQATERHR KPENFIAAVT RNGHGLKVET
DLSGRERATE AMLMGLRLTE GVDLARVEAR SGLPRADFVD ADAVARLAGQ GLLVADGDRL
AVTGAGILLL DSILSEVVET R
|
|---|
| |