| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0249 |
|---|
| Symbol | |
|---|
| ID | 4083107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 252742 |
|---|
| End bp | 253662 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638008607 |
|---|
| Product | methionyl-tRNA formyltransferase |
|---|
| Protein accession | YP_615305 |
|---|
| Protein GI | 103485744 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0223] Methionyl-tRNA formyltransferase |
|---|
| TIGRFAM ID | [TIGR00460] methionyl-tRNA formyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.153512 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATCG CTTTCATGGG AACGCCGCCC TTCGCGGTGC CGACGCTCGC CGCGCTCCAT
ACGGCGGGAC ATGATATTGC GGCTGTCTAT AGCCAGCCCC CGCGACCCGC GCAGCGCGGC
AAGAAATTGC AGAAAAGCCC GGTGCAGCTG TGGGCCGAGG AGCATGGCCT GCCCGTTCGG
ACGCCCAAAA GCCTGAAAAG CGACGAGGCG CAGGCGGAGT TTGCCGCATT GGACCTCGAT
GTCGCGGTGG TCGCGGCCTA TGGGCTGATC CTGCCGCAGG CGGTGCTCGA CGCACCGCGC
GAAGGGTGCC TCAACGTCCA TGGATCGATC CTGCCGCGCT GGCGCGGCGC GGCGCCGGTG
CAGCGTGCGA TCCTGGCGGG CGATGCCGAA ACGGGCGTGA CGATCATGCA GATGGATGCG
GGGCTCGACA CCGGCGCGAT GCGGCTCATT GAAACGACGC CGGTCGCGCG CAAGAGCGCG
GGATTGCTGA CGCACGAGCT GGCCGAAATG GGCGCGCTGA TGATGCGCCG CGTGCTGAGC
GAACTTCACG CCTTTCCGCC CGTGCCGCAG CCGGACGAAG GCGTCACCTA TGCGGCGAAG
ATCGACAAGA GCGAGGCGCG GCTCGATTTC CTGGTGAGCG CGGTGCAGGT CGAGCGGCAG
GTGCGCGCGT TCAATCCGGC GCCGGGAGCG TTTTTCGAGC TGGAGGGTGA ACGCTACAAG
GTGCTGGCTG CGGAGGTCGT GCATCCTGCG GAGACGGTGG CGGGTGCGGC CCCCGGCGTC
ACGATCGACG ATAGGCTCGC CATCGCCTGC AACCCCGGCG CGATCCGCGT GACGCGCATC
CAGCGCGCGG GGAAACCCGC GATGGAGGCG GGCGAGATGT TGCGCGGGCG GGGAATCGCC
AAGGGGACAC GGCTGGCATG A
|
|---|
| Protein sequence | MRIAFMGTPP FAVPTLAALH TAGHDIAAVY SQPPRPAQRG KKLQKSPVQL WAEEHGLPVR
TPKSLKSDEA QAEFAALDLD VAVVAAYGLI LPQAVLDAPR EGCLNVHGSI LPRWRGAAPV
QRAILAGDAE TGVTIMQMDA GLDTGAMRLI ETTPVARKSA GLLTHELAEM GALMMRRVLS
ELHAFPPVPQ PDEGVTYAAK IDKSEARLDF LVSAVQVERQ VRAFNPAPGA FFELEGERYK
VLAAEVVHPA ETVAGAAPGV TIDDRLAIAC NPGAIRVTRI QRAGKPAMEA GEMLRGRGIA
KGTRLA
|
|---|
| |