| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0181 |
|---|
| Symbol | |
|---|
| ID | 4082290 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 185217 |
|---|
| End bp | 187952 |
|---|
| Gene Length | 2736 bp |
|---|
| Protein Length | 911 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638008540 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_615238 |
|---|
| Protein GI | 103485677 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.331528 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAGG ATGCCGATCC CGCCGCCGAA GCGGGCGGCG AAGAAGAAAT CGTCGTTTCG
GGCTTCCGCG CCAGCCTCGA AAGCGCTGTC GGCGCCAAAA AGGAACGCGA TCAGGTCGTC
GAATCGATTT CGGCCGAAGA CATCGGCAAG CTGCCCGATG CCTCGATCGC CGAATCGATC
GCGCGCCTGC CGGGCCTGAC GTCGCAGCGC GTCTCGGGCC GCTCGAACTC GATCTCGATC
CGCGGCTTTG CGCCCGACTT TTCGACGACT TTGCTCAACG GCCGCGAACA GACCTCGACC
GGCGACAACC GCGCGGTCGA ATATGACCAA TATCCCAGCG AAGTGATCAA CCAGGTCCTC
GTCTACAAGA CGCCGATGGC GTCGATCGTC GGGCAGGGGC TTTCGGGCAC CGTCGACCTG
CGCACCATCC GCCCGCTCGA ATATGGCAAG AGCGTCATCT CGATCGGCGC GCGCGGCAGC
CTCGCCGACC TCGGCAAGCT CAACGCGGGG TCGAAAAAAT ACGGCTACCG CGTCAACGGC
GTGTTCGTCG ACCAGTTCGC GAACGACACG ATCGGCGTCG CGCTCTCGGC GAGCTATGTC
GACGAGCCCT ATCAGATTCA GGAGTTCAAC GCCTGGGGCT ATGCGGGCGC CGGAACGGCG
GCGAGCCCCG TGGTGATCGG CGGGTCGAAA AGCTACGCGA CCTCGACCCA GCTCACCCGC
CTCGGCCTCC AGGGCACGCT GCAATGGCAG CCGCACCCCA ATTTCACCTC GACGCTCGAT
GCCTTTTATT CGGACTTCAA GGACGACCAG ATCAAGCGCG GGATCGAACT GCCGCTCGCC
TTCGGCGGCG CCGGGGTCAA TGTCACCGAC ATCGACGAGA GCGGCGAGTT CGTCTTTGCC
CGTGCCGGAA CCTTCACCAA TGTCGAGGGC GTCGTGCGCA ACGACGTGTT CGAGCGCAAG
GCCAAGCTTT ACAGCTTCGG ATGGAACAAC CGCTGGGAAG GCGACGATGG CTGGAACGTC
ACCGCCGACG TCAGCCTGTC GAAGACCGAC CGCAACGAGC TGATCTTTGA AAGCAATGCC
GGCACTGGCC GCGGCGGCGG CGTCGGCGCG GTCGACACGA TCGGTTTCCG TAGTGACCGT
AATGGCACGG TGTTCAGCCC GACGCTCAAC TATGGTGACT ATGACCTCAT CCAGCTCACC
AGCCCGCTCG GCTGGGGCGG CGATCAGACG AGCGTTGACG GCCGCCGCAT CCTTGGCGGG
CAGGACGGTT ATTACAACAA CCGCATCATT GAGGACGAGC TGTGGCAATA TCGCGTCGAG
GTCGAACGCG AACTCGAAGG CTTTTTCCGC TCGGTCCAGT TCGGCGTCAA CTACACCGAT
CGCTCGAAAA GCCTCGTCCC CGACGAAGCC TTTGTCGGGC TCGTCGCCAA CACCGACGGG
TTGACCAGCG TGCCGGTGCC CGAACAGTTC CGCCTCGGCA CCACCGACCT CGAATATCTC
GGCCTCGGTC CCGTCATCAG CTACGATCCG CGCGACCTGC TTGCGGCCGG GCTCTACCAG
TTGGTACCGA ACCCCTATGG CGATGTGGTC GTCAAGGCCT ATGATGTCTC CGAAAAGCTG
ATGACCACCT ATGTTCAGGC GAATATCGAC CATGAAATGG GCTCGTCGCT GCTCACGGGC
AACATCGGCG TCCAGGCGAT CTTCACCGAC CAGAACTCGA ACGGCGCGAG CGCGTCCTTC
ATCGGCACCA ATCCCAATGG ATCGCCCAAC ATCCAGGGCA TCCCGCAGCG TCGCAGCACC
GACTATGTCG ATGTGCTGCC CAGCCTCAAC CTGTCGCTGC GCACGGCGGG CGATTTCGTG
ATCCGGTTCA GCGCGGCGCG CGAGATCATC CGCCCGCGCC TCGACGACAT GCGCGCTTCG
CTGAGCTATG GCACCACCGT CGGCGATCCG GGCGGCATGA CCTGCCCAGC CGGACGGCTG
TGCGCTGTCG TACGCGGCGA TGCGGGCAAT CCCGATCTCC GACCGTGGCG CGCCAACGCT
GTCGATCTGA CCTTCGAAAA ATATTTCGGG TCAAAGGGTT ATCTGGCGTT GCAACTCTTC
TACAAGGATC TGAAGAGCTA TATCTATAAT CAGGCGATCC CCTTCGACTT CACCGGCTAT
CCGATCGCGC CGGTTGGTAA TGACTCGAAC GGCAACCCGA TCATCGTCAA CTTTATGGGC
ACGGTGAACG CCCCGATCAA CGGCGAGGGC GGCGAGCTCT ACGGCGCCGA AGTCGCGGGC
ACCTTGCCCT TCGGCGAGAT TGTCGGCGCG CTCGACGGCT TCGGTGTGAC CGGCGGCGCT
TCCTATACCA AGACGAAGAT TGCGCCGACC CCCGGTGCGC CCGCGGAGGA TATCCCCGGC
TATTCGAAAT GGGTCGCGAA CGGCACCATC TTCTTCGAAA AATGGGGATT CAACGCCCGT
GCCAGCGCAC GTTACCGGTC GAGCTTCGTC GGCGAGCTGT CGGGCTTCGG TGGCAATCGT
GTGCGCCGCC GCGCGCGGCC GGAAACGATC ATCGACGCGC AGATCGGCTA TGATTTCCAG
CCGGGCAGCG CGCTCGAAGG CCTGTCGATC TTCGTGCAGG GCCAGAATCT GACCGACGAA
CCCTTCGTCA CCGACGATCC GCGCGACGCG CGTGCGGTCA TCGACTATCA GGTCTATGGT
CGCCGCTTCC TGGCGGGCGC CTCGTTCAAG TTCTGA
|
|---|
| Protein sequence | MAQDADPAAE AGGEEEIVVS GFRASLESAV GAKKERDQVV ESISAEDIGK LPDASIAESI
ARLPGLTSQR VSGRSNSISI RGFAPDFSTT LLNGREQTST GDNRAVEYDQ YPSEVINQVL
VYKTPMASIV GQGLSGTVDL RTIRPLEYGK SVISIGARGS LADLGKLNAG SKKYGYRVNG
VFVDQFANDT IGVALSASYV DEPYQIQEFN AWGYAGAGTA ASPVVIGGSK SYATSTQLTR
LGLQGTLQWQ PHPNFTSTLD AFYSDFKDDQ IKRGIELPLA FGGAGVNVTD IDESGEFVFA
RAGTFTNVEG VVRNDVFERK AKLYSFGWNN RWEGDDGWNV TADVSLSKTD RNELIFESNA
GTGRGGGVGA VDTIGFRSDR NGTVFSPTLN YGDYDLIQLT SPLGWGGDQT SVDGRRILGG
QDGYYNNRII EDELWQYRVE VERELEGFFR SVQFGVNYTD RSKSLVPDEA FVGLVANTDG
LTSVPVPEQF RLGTTDLEYL GLGPVISYDP RDLLAAGLYQ LVPNPYGDVV VKAYDVSEKL
MTTYVQANID HEMGSSLLTG NIGVQAIFTD QNSNGASASF IGTNPNGSPN IQGIPQRRST
DYVDVLPSLN LSLRTAGDFV IRFSAAREII RPRLDDMRAS LSYGTTVGDP GGMTCPAGRL
CAVVRGDAGN PDLRPWRANA VDLTFEKYFG SKGYLALQLF YKDLKSYIYN QAIPFDFTGY
PIAPVGNDSN GNPIIVNFMG TVNAPINGEG GELYGAEVAG TLPFGEIVGA LDGFGVTGGA
SYTKTKIAPT PGAPAEDIPG YSKWVANGTI FFEKWGFNAR ASARYRSSFV GELSGFGGNR
VRRRARPETI IDAQIGYDFQ PGSALEGLSI FVQGQNLTDE PFVTDDPRDA RAVIDYQVYG
RRFLAGASFK F
|
|---|
| |