Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_0031 |
Symbol | |
ID | 4082218 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 30847 |
End bp | 31545 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638008391 |
Product | ThiJ/PfpI |
Protein accession | YP_615090 |
Protein GI | 103485529 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0533722 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGACA TGTCGGCCAC CAACATCGTC TTCCTGCTGT TTCCCGGCGT CACCCAGCTC GATTTCACCG CGCCCGCGCA AGCGCTGAGC CGGATGCCGG GCGCGGTTGT CGCAGGGGCC GCCTCCAGCC TTGCCCCGAT CGCGACCGAC AGCGGCTTTG CAATCGTGCC GACGCACGAT TTCGCCTCTG CGCCGCAGGC CGATATCTTG TGCGTGCCGG GCGGGCATGG CGTCGCCGAG GCGCTGGGTG ATGCCGCGAC GATTCATTTC ATCGCCCGGC AGGCCGCGCG CGCCGCATGG GTCACAAGCG TCTGCACGGG CGCCTTCCTG CTCGGGCGCG CGGGGCTGCT CGCGGGCAAA CGCGCGACGA CACATTGGGC TTATACGCAT TTGCTGCCGC TGGTCGGTGC CGAACATCAA CCGGGCCGCG TCGTCGAGGA TGGACAGATC GTGACGAGTG GCGGCGTTAC GTCGGGGCTC GATTTTGCGT TGACGCTGAT CGCCAGACTG AAAGGAGCGG CGGTGGCGCA GGCGATCCAG CTCGCAATCG AATATGATCC CGCGCCGCCC TTCGCCGGCG GCCATCCGGA CCGCGCACCC GACGCGGTGA CGACCGGGCT GAAACAGCGT GTCTATGACG CCGCCGCTGC ACGCATGGAG GCGGCGCTTC GCGGCGAGGG CGTGATCGTC TTGGATTGA
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Protein sequence | MTDMSATNIV FLLFPGVTQL DFTAPAQALS RMPGAVVAGA ASSLAPIATD SGFAIVPTHD FASAPQADIL CVPGGHGVAE ALGDAATIHF IARQAARAAW VTSVCTGAFL LGRAGLLAGK RATTHWAYTH LLPLVGAEHQ PGRVVEDGQI VTSGGVTSGL DFALTLIARL KGAAVAQAIQ LAIEYDPAPP FAGGHPDRAP DAVTTGLKQR VYDAAAARME AALRGEGVIV LD
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