| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3001 |
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| Symbol | |
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| ID | 4078031 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 3169277 |
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| End bp | 3169930 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638008330 |
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| Product | GntR family transcriptional regulator |
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| Protein accession | YP_614995 |
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| Protein GI | 99082841 |
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| COG category | [K] Transcription |
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| COG ID | [COG2188] Transcriptional regulators |
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| TIGRFAM ID | [TIGR02018] histidine utilization repressor, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.471781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGCCGGA TCGAAGCGCG CGTCTGGGAC CAGGGGGCGC TCTTGCCAAC AGAGGCAGAT
CTCGCCGAGG AATTTGGCTG CGCCCGTGCG ACTGTCAACC GTGCGCTGCG TGAACTTGCA
GATCGCGGTA TCATCGACCG CAAGCGCAAG AGTGGCACCC GCGTCGCCAC GCTGCCTGTC
AAGCAGGCCA AGCTCGAGAT CGCCACCACG CGGCGCCTCG TCGAAGAGCG CAACGCCACC
TACCGCTATG CGCTTGTTTC ACGCAGCCTG CAACCCGCTC CGGGCTGGCT CAGTTCCCAG
ATGGGCTTGG CCATCAATGC GCAGGTTCTC CACATGGAGG TGATGCATTA TGCGGATGGC
CAGCCCTTTC ACTTTGAAGA TCGCTGGATC AACATCGCGG CAGTGCCTGC AAGCGAAACT
GCTGATTTCT CTGAAACCCC TCCGGGAGAA TGGTTGCTGG CGGCGGTCCC GTTCTCCAAT
GCGGAGGTCA GCTTCTTTGC CAGCGCTGCG GATGCCAAGA TTGCGGATTA TATGGCCTGC
CCACCGGGTA CAGCCCTGTT CCAGATGGAG CGTTCCACCT GGTTTCAGGA TCAACCCGTG
ACGTTTGCCC GGATGAGCTT TCAGCCGGGC TACCGGATGC GGAGCCGTTA CTGA
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| Protein sequence | MRRIEARVWD QGALLPTEAD LAEEFGCARA TVNRALRELA DRGIIDRKRK SGTRVATLPV
KQAKLEIATT RRLVEERNAT YRYALVSRSL QPAPGWLSSQ MGLAINAQVL HMEVMHYADG
QPFHFEDRWI NIAAVPASET ADFSETPPGE WLLAAVPFSN AEVSFFASAA DAKIADYMAC
PPGTALFQME RSTWFQDQPV TFARMSFQPG YRMRSRY
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