| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2988 |
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| Symbol | |
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| ID | 4078018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 3153256 |
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| End bp | 3154362 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638008317 |
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| Product | polyamine ABC trasnporter, periplasmic polyamine-binding protein |
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| Protein accession | YP_614982 |
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| Protein GI | 99082828 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.106267 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.817563 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTGC GTACACTGTC GGCTCTGGCC GCCACGACCG CACTTTGCGC GCCGATGGCA
ATGGCTACCG AGATGGCCAA CGAAATGACC CTGGTGTCCT GGGGTGGTGC CTATCAAGAA
AGCCAGCTGA AGGCCTATGT CGAGCCCTAT CTGGAAATGA ACCCCGACGT GACCGTGGTT
TGGGATGAAA GCTCTGCCGA AGCGACCGCA AAAATGCGCG CAATGGCCGA AGCAGGTAAC
ATCACCTGGG ACCTGGTCGA CGTTGTGGCA TCCGACGCGA TGCGTCTGTG CGACGAAGGT
CTGGCGCTTG AGCTCGACCA CGACGAAGTT CTCGCGGCTG CACCCGATGG CACCTCCGCG
TCCGACGACT TTGGCGACCT GCTGGTCTCC GACTGCTTCG TGCCGCAGAT CGTTTACTCC
ACCACCTTTG GCTACCGCAC CGACTTGGTC GGCGACACGC CGCCGTCCTC TGTCTGTGAC
GTGTTCGACC TCGAAGCCTA TCCGGGCAAG CGCGCGCTGC AGAAGCGTCC GATCGACAAC
ATGGAGTGGG CTCTTTACTG CGATGGCGTC GCCAAAGACG AGATCTATGA CACCCTCAGC
ACCGACGAAG GTGTGGCGCA GGCTCTGGCC AAGCTAGACA CCATCAAGGA CAGCGTCGTG
TGGTGGACTG CTGGCGCGGA AACCCCGCAG CTGCTCGCCG ATGGCGAAGT CGTGATGGGT
TCGACCTACA ACGGTCGTCT GTTCTCTGCG ATCGCAGAGC AGGATCAGCC GATCGGCATG
CTCTGGGACA TGCAGTCCTT TGACCTCGAC GGTTGGGTTG TTCCGGCCGA CTTGCCTGCA
GATCGCGAAG CCCGTGTTCT GGACTTCCTG AAGTTCGCAA CCGACACGCA GCGTCTGGCC
GACCAAGCGA AGTACATCTC CTACGGTCCG GCCCGTGCGT CTTCCGCACC GCTGGTGGGC
AAGCACGAAG AGCTGGGCAT CGACATGGCG CCGCACATGC CGACTGACCC GAACAACGCG
ACCAACGTGC ACATCTATGA CTACGAGTGG TGGGCGGACA ACCGTGACGA TCTGGACGCA
AAATTCCAGG CGTGGTTGGC GCAATAA
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| Protein sequence | MKLRTLSALA ATTALCAPMA MATEMANEMT LVSWGGAYQE SQLKAYVEPY LEMNPDVTVV
WDESSAEATA KMRAMAEAGN ITWDLVDVVA SDAMRLCDEG LALELDHDEV LAAAPDGTSA
SDDFGDLLVS DCFVPQIVYS TTFGYRTDLV GDTPPSSVCD VFDLEAYPGK RALQKRPIDN
MEWALYCDGV AKDEIYDTLS TDEGVAQALA KLDTIKDSVV WWTAGAETPQ LLADGEVVMG
STYNGRLFSA IAEQDQPIGM LWDMQSFDLD GWVVPADLPA DREARVLDFL KFATDTQRLA
DQAKYISYGP ARASSAPLVG KHEELGIDMA PHMPTDPNNA TNVHIYDYEW WADNRDDLDA
KFQAWLAQ
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