| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2934 |
|---|
| Symbol | |
|---|
| ID | 4077085 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 3102377 |
|---|
| End bp | 3103309 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638008263 |
|---|
| Product | periplasmic binding protein |
|---|
| Protein accession | YP_614928 |
|---|
| Protein GI | 99082774 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.371372 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.385675 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGC GTAACCTTTT GCCATTGCTC GGCCTCATGG CATCTGCAGC GCATGCTGAT
GCCGTCACCA TCCAAAGCTG CGGCGTCTCT CAAGTGTTCG ATAAAACGCC GAGCCGCGCG
ATCACGCTCA ACCAGCAGGC AACCGAAGTC ATGCTGGCGC TGGGCCTGCA GGAAGCGATG
GTTGGAACCG CGTACATTGA CGACGCGATT CCCGCGCAAT GGAACGACGC CTACGAGAGC
GTGCCGGTTC TGGCTGAAAA ATACCCAGCC GCAGAGGTGG TATTGGCGCA GGAACCGGAC
TTTTTGTTTG CCGGCTTTGG ATCGGCGTTT TCTGAGGACA ATCTCGGTGC CGCCGAGAAA
TGGCACGACC TCGGGATTGG CACCTATCTT GTGGATGCCT CCTGCAAGGA CAAACACCTT
CAGGACGTGC CCTTGACCGT TGCCCCGATC TTTGAAGATA TTGAAACTGT TGGAAAAATA
TTCAACGTAG AAGACCGTGC GAACGCATTG ATCGATACCC TTCAACAGCG GTTGGACTCT
GTCAAAGCAG CGCCGTCCGG GGCGGGGCAG ACTGCCTTCA TCTATGATAG CGGCGCAGAG
ACGCCTTTCT CCATCGGGTG TTGTGGCGGG CCTGCGCTGC TGGCGTCGCT CACGGGGCTT
CAGAGCATCA GCAGCGATGT GCCCGGCACT TGGGTCGATC TCTCTTGGGA GCATGTGGTT
GCCGCAGACC CGGATGTGAT CCTGTTGATC GAGGCGGATT GGTCGACCGC CGCAGAAAAA
CGCGCGCACA TGGAAGCGGA CCCAGTATTG AGCGCGTTGC GCGCGGTCAA AGAGGGGCGT
TTTGTAACCG TCCCCTTCTC GGAAACGCTG TTGGGGATGC GCTTTGCCGA TGGCGTGGAG
ACGGTGAACA ATCAACTTGC AAAGCTGCCG TAA
|
|---|
| Protein sequence | MKLRNLLPLL GLMASAAHAD AVTIQSCGVS QVFDKTPSRA ITLNQQATEV MLALGLQEAM
VGTAYIDDAI PAQWNDAYES VPVLAEKYPA AEVVLAQEPD FLFAGFGSAF SEDNLGAAEK
WHDLGIGTYL VDASCKDKHL QDVPLTVAPI FEDIETVGKI FNVEDRANAL IDTLQQRLDS
VKAAPSGAGQ TAFIYDSGAE TPFSIGCCGG PALLASLTGL QSISSDVPGT WVDLSWEHVV
AADPDVILLI EADWSTAAEK RAHMEADPVL SALRAVKEGR FVTVPFSETL LGMRFADGVE
TVNNQLAKLP
|
|---|
| |