| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2898 |
|---|
| Symbol | |
|---|
| ID | 4078576 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 3068040 |
|---|
| End bp | 3068657 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638008227 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_614892 |
|---|
| Protein GI | 99082738 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1376] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.915682 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGTA AAATCCCATT TTTAACGTCG CGCCGGCAGT TTCTTGCCGG GTCCGCATCG
CTTCTGGCCT CTCCTGCGCT TGGCCAGTCG CTTCCTGATG TAGAAGAGCC GGCATTTGAT
CCGCTGCGCC CCCCGCCGGA GCCGGAACCC AATGTGAAGC GGAATATTTC CTCTTTCCGC
GCCAAAAGCT GGAAACCCTA TTTTGACAAC CTGCGTCGCG GAGCGATCCT TGTGGATATC
GACAGCCGTG CACTGCATTT CTGGTCCGAG GATCAGAGCG TTTACAAGCT TTTCCCCTCT
TCGGTACCGC TCAGCGATGA TCTGACCCGC CGTGGCCGCA CACGCGTCGT GCGCAAGGTC
GAAGGGCCAA GCTGGGCGCC GACCCCCAAC ATGCGCAAGC GCAACCCCGA ATGGCCCGCC
TACATTCCCC CGGGGCCGGA CAATCCGCTT GGATCACACG CGCTCTACCT CAGTTGGCAG
TACTACCGAA TCCACGGCAC CCACGACACG CGCAAGATCG GGCGAAAGTC TTCGAACGGC
TGCATCGGTC TCTACAATGA GCATATCGCA GAGCTTTATA AACTTACCCG TTCGGGCACG
CAGGTGTTGC TAATTTGA
|
|---|
| Protein sequence | MTRKIPFLTS RRQFLAGSAS LLASPALGQS LPDVEEPAFD PLRPPPEPEP NVKRNISSFR
AKSWKPYFDN LRRGAILVDI DSRALHFWSE DQSVYKLFPS SVPLSDDLTR RGRTRVVRKV
EGPSWAPTPN MRKRNPEWPA YIPPGPDNPL GSHALYLSWQ YYRIHGTHDT RKIGRKSSNG
CIGLYNEHIA ELYKLTRSGT QVLLI
|
|---|
| |