| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2870 |
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| Symbol | |
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| ID | 4076404 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 3038576 |
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| End bp | 3039730 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 638008199 |
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| Product | coproporphyrinogen III oxidase |
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| Protein accession | YP_614864 |
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| Protein GI | 99082710 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
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| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0605644 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.195461 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGGATGATT GGCGGAATGG GGGCTTTGGT CTCTATGTGC ATTGGCCGTT CTGTCAGGCC
AAATGCCCCT ACTGCGATTT CAACAGCCAT GTGGTTTCCC AGATCGACCA ATCAGCCTGG
GTGACCGCCT ATCAGGCCGA GCTGCGCCGC ATGGGAGAAT TGCTCCCCGA TCGCCTCCTG
AACTCGATCT TCTTTGGTGG CGGGACGCCA TCCCTTATGC ATCCAGATAC CGTCGCCGCT
GTCATCGAAG CTGCACGCGA GAACTGGACC TTTGCAAATG ACATTGAAAT ATCCTTGGAG
GCCAATCCAG GATCGGTAGA AGCCGGTCGT TTTGCGGGTT ACCGAGATGC GGGCGTCAAC
CGGATCTCAA TGGGGATCCA AGCGCTCAAT GATGAGGATC TGCGGCGTCT CGGACGCATC
CACTCCGTTG AAGAGGCCCG CAAAGCCTTC GACGTTGCGC GAAACTGTTT TGATCGTGTG
AGCTTTGATC TCATTTATGC GCGCCAGGGC CAGACATTGA ACGCATGGAA GGCCGAGCTT
TCAGAGGCCT TGAGCATGGC GATTGATCAT CTCTCGCTCT ATCAGCTCAC GATCGAAGAC
GGCACCGCCT TTGGGGATCG CTATGCCCGC GGCAAGCTGC GGGATCTGCC CACCGATGAT
CACGCCGCAG ATATGTATCT CGCGACCCAA GAGATCTGTG AATTGTATGG ATTGCCTGGC
TATGAGATTT CCAACCACGC CCGTCCGGGC GCAGAAAGCC GCCACAATCT GATCTACTGG
CGATATGGCG ACTACGTTGG GATCGGTCCG GGCGCTCACG GTCGCATCAC GTTGAACGGA
ACCCGTTTCG CCACAGAGGC ACCCCGCGCA CCTGGCGCAT GGCTCTCTGC AGTGGAACAA
GGCAATGGGC TATTGCCCTT TGATGCTTTG AACTCAGAAG ATCAGGTGAA TGAACACATG
ATGATGGGGC TGCGTCTGTT CGAAGGTGTA GATCTGGATC GGCATACTGC CCTCGCTCAA
AAGCCGCTCT CGCCATCCAA AATTCAAGAG CTTTGTAACC TCGGCATGTT AGATCTGGAC
GGGTCACGGC TACGGGCTAC GTCTCAAGGG CGCGCGGTAC TCAACGCGGT CCTGCGAGAG
CTGCTAACGG ATTGA
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| Protein sequence | MDDWRNGGFG LYVHWPFCQA KCPYCDFNSH VVSQIDQSAW VTAYQAELRR MGELLPDRLL
NSIFFGGGTP SLMHPDTVAA VIEAARENWT FANDIEISLE ANPGSVEAGR FAGYRDAGVN
RISMGIQALN DEDLRRLGRI HSVEEARKAF DVARNCFDRV SFDLIYARQG QTLNAWKAEL
SEALSMAIDH LSLYQLTIED GTAFGDRYAR GKLRDLPTDD HAADMYLATQ EICELYGLPG
YEISNHARPG AESRHNLIYW RYGDYVGIGP GAHGRITLNG TRFATEAPRA PGAWLSAVEQ
GNGLLPFDAL NSEDQVNEHM MMGLRLFEGV DLDRHTALAQ KPLSPSKIQE LCNLGMLDLD
GSRLRATSQG RAVLNAVLRE LLTD
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