| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2748 |
|---|
| Symbol | |
|---|
| ID | 4077620 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2896222 |
|---|
| End bp | 2896743 |
|---|
| Gene Length | 522 bp |
|---|
| Protein Length | 173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638008073 |
|---|
| Product | tripartite ATP-independent periplasmic transporter DctQ |
|---|
| Protein accession | YP_614742 |
|---|
| Protein GI | 99082588 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.000637156 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGGGG ATTTTGCAGG GCGGCTCAGC CACCAGATCA ATCGCGGCAC GGAAGTGATC
CTCGCCGCGT TGATGGTGGC GCTGGTGCTC GACGTCTGGA TTGGCGTTGT GGATCGCTAC
TTCTTTCACT GGCAACTGCC CTGGCCCGAA GTCCTCGCGC GATACCTGAT GATCTGGGCT
GCGATGCTCG CTGTGTCATC GGGGATCGCG CGGCGCGAAC ATATCGGACT GACGGCTGTG
CTAATGATCC TGCCTGCCCC TTTGCGTCGT GGCATGCTGA TCCTCATCGA CCTGATGACC
TTTGCCCTGT TTTTCTACGT CCTGTGGTTC GGGATCGGCT TTGCAGAGAG TGGCGCCAAA
CGGCAGGCGA TGATCCTGGG CGCGACTTTG CAGCCCTTTT ACATGGCGAT CCCGGCCGCC
GCGGCGTTGG CCTGCGTGCA AGTCGTCCTG GTGATGATCC GCGATGCAGG CGGCCAGCTC
GACCTCAATG ACACCGATTC CAAGGAAGGA GCAGGCGCAT GA
|
|---|
| Protein sequence | MIGDFAGRLS HQINRGTEVI LAALMVALVL DVWIGVVDRY FFHWQLPWPE VLARYLMIWA
AMLAVSSGIA RREHIGLTAV LMILPAPLRR GMLILIDLMT FALFFYVLWF GIGFAESGAK
RQAMILGATL QPFYMAIPAA AALACVQVVL VMIRDAGGQL DLNDTDSKEG AGA
|
|---|
| |