| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2711 |
|---|
| Symbol | |
|---|
| ID | 4077018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2855588 |
|---|
| End bp | 2856346 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638008036 |
|---|
| Product | Asp/Glu racemase |
|---|
| Protein accession | YP_614705 |
|---|
| Protein GI | 99082551 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3473] Maleate cis-trans isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.879524 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGACGC CTTTTCCCTA CGAGATCGCA GAGGATCCGC GCCCGCGCCT GGGGCTCATT
GCCTTGCAGG TGGATGAAAC CATCGAAGAG GATTTTCGGG TAATGTTCCC GCGCCAGGCT
GCGCGGCTAC ATGTGAGCCG GGTGCCATCG GGGGCAGAGC TCACTCCTGA GACCATCGCC
GGGATGGAAG ACGATCTGCC GGCGGCTGCC CGCCTGCTAC CGCCCGCGGC GCGCTTTGAG
GTCATCGCCT ACGGCTGCAC GTCGGGAACC GGCCAGATCG GCGTCGAGCG TGTCGCAGAG
TTGATCCAGA CAGGCGCCAC CACCAAGGCG GTCAGCAATC CGCTGAGCGC TGCTATAGCC
GCTTTGAACG CGCTGGGGGT CTCGCGTGTC GGGATCGTCT CGCCCTATAT TGACGCCGTG
GCCGCGCCGA TCCGTGCAGC ATTTGTTGAC GCGGGCCTAT CGGTGCCTGA TATGCTCGGG
TTTGGCGAGG AAGTGGAGGC ACGCGTCGCC CGGATCGCAC CCCGGTCCAT TTGCGCTGCG
GCCCATGCGC TCGGCGAGCG CAGCACGCTA GATGCGGTGT TTCTCTCCTG CACCAACCTA
CGCACGCTTG ATGTGATCCC GCTGCTCGAA CAGCAACTTG GCCTTCCGGT TCTCAGCTCC
AATCAGGTCC TGGCTTGGCA CATGGCAGCG TTGGCGGGTC TTGAGCTTGA TGATCTCGAA
GTGCCGGGGC AGCTTGGCAA AAAGGCGGCG CAGCCCTGA
|
|---|
| Protein sequence | MMTPFPYEIA EDPRPRLGLI ALQVDETIEE DFRVMFPRQA ARLHVSRVPS GAELTPETIA
GMEDDLPAAA RLLPPAARFE VIAYGCTSGT GQIGVERVAE LIQTGATTKA VSNPLSAAIA
ALNALGVSRV GIVSPYIDAV AAPIRAAFVD AGLSVPDMLG FGEEVEARVA RIAPRSICAA
AHALGERSTL DAVFLSCTNL RTLDVIPLLE QQLGLPVLSS NQVLAWHMAA LAGLELDDLE
VPGQLGKKAA QP
|
|---|
| |