| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2709 |
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| Symbol | |
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| ID | 4077016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2853377 |
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| End bp | 2854435 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638008034 |
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| Product | pyridoxal-5'-phosphate-dependent enzyme, beta subunit |
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| Protein accession | YP_614703 |
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| Protein GI | 99082549 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01747] diaminopropionate ammonia-lyase family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.201895 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.879524 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGTCA CCGTGTCCAA CCCCCACCGA GGTCAGGGTC TCTCCCTCGA CGCACCGTTT
CCCTGCGAGG ATGCCGGGGC TGTGACACGG CTGTTGCAAC GCTGTCCCGC GCATCAGGAG
ACACCGCTTT TGTCCGTGCC GACGCTGGCC GCGTTCTGTG GCGTCGCCAA GATCCACCTG
AAGGATGAGC GCAACCGCAT GGGGCTTGGC AGTTTCAAAG CGCTGGGCGC TGCACATGCC
ATTGCCCGGG CAGCACAAGA GGTGGTCGAA GGCGACAGCT GGACAACAGC GCTCAAGGGA
CGAACTTTTG TGACCGCTAG CGCTGGCAAT CACGGTCTGT CGGTTGCTGC GGGTGCCGCA
CTCTTTGGCG CGCAGGCGGT GATCTACCTT TCCGAAACCG TGCCAGAAGG TTTTGCGGCG
CGGCTGCGTG CCAAGGGGGC CGAGGTGGTG CGCGCGGGCG CGGACTACGA GGCCAGCATG
GTCGCGGCAG AAACGGCGGC AGAGGAAAAC GGCTGGACAT TGCTCTCGGA CAGCTCCTGG
CCGGGCTATA CCGAACTCCC CTATCGGGTC ATGGAAGGCT ATCTGCAAAT GGCTGCGGAG
GTTGCGCAGC AGGTACCTGA ACCACCCACA CACATTCTGC TGCAGGCCGG GGTCGGTGGG
CTGGCCGCCG CTGTTGCCGC CCATGCGCGC CGGGTCTGGG GCGATGCGCC ACAGATCATC
GTGGTCGAAC CCGAAGCCGC CCCTGCACTT GTCGAGAGCA TCAAAGCTGG CGCAGTGGTC
GAGACCAAAG GTCCGGTCTC TGCAATGGGA CGGCTTGATT GCAAAACGCC GTCGATGATT
GCGCTTCAGG GGCTCGCACG GGACGCCGAC CTGTTTGTGA CCCTCACCGA AGCTGAGGCC
GCAGCCGCCG TGGCCACGCT CGAGGCAGAA GGCTTGGCAA CCACGCCCTC TGGAGGGGCG
GGCATCGCAG CCTTGATCGC CGGTCTGGCG CTACCGCAAG ACGCGCGCGT ATTTGCGATC
CTCAGCGAAG GCCCGGAAGA AGGAACAGGC GATGCCTGA
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| Protein sequence | MPVTVSNPHR GQGLSLDAPF PCEDAGAVTR LLQRCPAHQE TPLLSVPTLA AFCGVAKIHL
KDERNRMGLG SFKALGAAHA IARAAQEVVE GDSWTTALKG RTFVTASAGN HGLSVAAGAA
LFGAQAVIYL SETVPEGFAA RLRAKGAEVV RAGADYEASM VAAETAAEEN GWTLLSDSSW
PGYTELPYRV MEGYLQMAAE VAQQVPEPPT HILLQAGVGG LAAAVAAHAR RVWGDAPQII
VVEPEAAPAL VESIKAGAVV ETKGPVSAMG RLDCKTPSMI ALQGLARDAD LFVTLTEAEA
AAAVATLEAE GLATTPSGGA GIAALIAGLA LPQDARVFAI LSEGPEEGTG DA
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