| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2646 |
|---|
| Symbol | |
|---|
| ID | 4077949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2779924 |
|---|
| End bp | 2781066 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638007970 |
|---|
| Product | alkane 1-monooxygenase |
|---|
| Protein accession | YP_614640 |
|---|
| Protein GI | 99082486 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.593817 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAGT TCATCCCGAC CGAGAAACTG CGTGACTGGC GCCATGCGTT GCCCTTCTGG
CTGTCGCTGG CGCTGGTGCC GCTGGTCTGG GCTGGCGCCT ATCTGGGCAG TTGGTGGGTG
CTGATGACAC CGCTGGCGAC CTGGTATCTC TTTGCGGTTC TGGACGGGGT TCTCGGGCTC
GAACTCGAAA ATGCCGACCC GCAAACGGCC GAGGCGGACC TCAAGTGGTA TGTGCGGCTG
ACCTCGGTCT GGGTGCCGAT CCATGTTCTG TGTCTCTTTG GCCTTATCGC CTATGTCAGC
GACGCCACGC ATCTGAGCCG GCTTGAAAAG ATCGGCGTTT TCTTTGGCAT GGGGGTGATC
TCTGGCACCA TCGGGATCAA CTACAGCCAC GAGCTGATGC ACCAACGCAG CCGGCTGGAG
CGCTGGCTCG CGGATATTCT GCTTGCCATG GTGCTCTATT CGCATTTCCG CTCCGAGCAT
CTTCTGGTGC ATCACCGCTA TGTGGGCACG CCCCGCGACC CGGTGACGGC GCGCTATAAC
GAGGGGTTTC ACCGCTTTTA TCCGCGCGTG CTCTGGCAAT GCTGGCGCTC TGCGTTTGGA
GCCGAGGCAG ACCGGCTGGC GCGCAAATCC CTGCCCTGGA CGCACCGCAG CAATCCCTTC
TGGCGCTATT GGGCGCTTCA GCTCGGGATG CTTGCACTGG CCTTTGCCTT GGGCGGGCTG
TCGGGGGTGT TGCTGTTCCT TGTGCAGGCC AGCGCCGCGA TCTGGCAGCT GGAGCTGGTG
AATTACATCG AACACTATGG GCTGACGCGC AAACATCTGG GCGATGGCAA ATACGAACAT
GTCAAACCGC ATCACTCGTG GAACGCCGCG CATAAGGCCT CGAACTGGCT GCTGATCAAC
CTGCAGCGCC ACTCCGACCA TCACTACAAA CCCGACCGGC GCTTTCCCCT GCTGCAGAAC
TACTCCGCAT CCGAAGCGCC GCAATTGCCC TATGGGTATC CGGTGATGTC GATTGCGGCG
ATGATCCCGC CGCTGTGGCA GCGCATCATG AACCCGCGCG TGCGGCGCTG GCGCAAGCAA
TATTACCCGG AGATCACGGA CTGGAAGCCC TACAACCGGC ACCAAACCCC GATGCCGCGC
TGA
|
|---|
| Protein sequence | MTEFIPTEKL RDWRHALPFW LSLALVPLVW AGAYLGSWWV LMTPLATWYL FAVLDGVLGL
ELENADPQTA EADLKWYVRL TSVWVPIHVL CLFGLIAYVS DATHLSRLEK IGVFFGMGVI
SGTIGINYSH ELMHQRSRLE RWLADILLAM VLYSHFRSEH LLVHHRYVGT PRDPVTARYN
EGFHRFYPRV LWQCWRSAFG AEADRLARKS LPWTHRSNPF WRYWALQLGM LALAFALGGL
SGVLLFLVQA SAAIWQLELV NYIEHYGLTR KHLGDGKYEH VKPHHSWNAA HKASNWLLIN
LQRHSDHHYK PDRRFPLLQN YSASEAPQLP YGYPVMSIAA MIPPLWQRIM NPRVRRWRKQ
YYPEITDWKP YNRHQTPMPR
|
|---|
| |