| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2563 |
|---|
| Symbol | |
|---|
| ID | 4076694 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2705435 |
|---|
| End bp | 2706193 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638007887 |
|---|
| Product | pyridoxine 5'-phosphate synthase |
|---|
| Protein accession | YP_614557 |
|---|
| Protein GI | 99082403 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0854] Pyridoxal phosphate biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR00559] pyridoxine 5'-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.117328 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00154499 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTACCA ACACTCTGCG CCTTGGCGTC AATATCGACC ATGTCGCGAC CGTGAGAAAC
GCGCGTGGCG GTGCCTATCC AGACCCGATC CGCGCGGCGA AATTGGCCGA AGAGGCCGGA
GCCGATGGCA TCACGGCGCA TCTGCGCGAA GACCGCCGCC ACATCGTTGA TGCGGACATC
GACGGCCTTA TGGCTGCGCT GACGGTGCCG CTCAATTTTG AGATGGCCGC AACCGAGGAA
ATGCAAAAGA TTGCCCTGCG TCACAAACCA CATGCGGTCT GCATCGTGCC GGAAAAGCGC
GAGGAACGCA CAACCGAAGG CGGGCTTGAT GTGGTGCGCG ACGAAAGCCG GCTGGCTGCC
TGTATTGCGC CGCTGCGAGA GGCCGGAAGC CGGGTTTCTA TTTTCATCGC TGCGGATCAG
AAACAGATCG AAGCCGCCCA TCGCATCGGT GCCGAGGTGA TCGAGCTGCA CACCGGAGCC
TATTGCGACC ACCACGCCGA GGGCGATTTT GCTGCCCGCG ACGCTGAGTT GGCAGCGCTT
GGCGAGATGG CCACCTACGC ACATTCCTTG GGGCTTGAAG TTCACGCGGG GCATGGCCTC
ACCTACGAGA CGGTTGCCCC TATCGCCGCC TTTCCCGAGG TGCGGGAGCT CAATATCGGG
CATTTTCTGA TCGGCGAGGC GATTTTTCGC GGCCTTTCTC CCGCGATTGG TGAAATGCGC
CGCCTGATGG ATGCGGCACG CTCTGGAGCT GACGCGTGA
|
|---|
| Protein sequence | MSTNTLRLGV NIDHVATVRN ARGGAYPDPI RAAKLAEEAG ADGITAHLRE DRRHIVDADI
DGLMAALTVP LNFEMAATEE MQKIALRHKP HAVCIVPEKR EERTTEGGLD VVRDESRLAA
CIAPLREAGS RVSIFIAADQ KQIEAAHRIG AEVIELHTGA YCDHHAEGDF AARDAELAAL
GEMATYAHSL GLEVHAGHGL TYETVAPIAA FPEVRELNIG HFLIGEAIFR GLSPAIGEMR
RLMDAARSGA DA
|
|---|
| |