| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2528 |
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| Symbol | hemE |
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| ID | 4076530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2668364 |
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| End bp | 2669401 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638007852 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_614522 |
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| Protein GI | 99082368 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCCAAC AGAAGACGAT CCTACGCGCA TTGGCAGGCG AAACGCAGGC CGTGCCGCCG
ATTTGGATGA TGCGTCAGGC CGGGCGTTAC CTGCCCGAAT ACCGCGCGAC CCGGGCACAG
GCCGGGGATT TTCTGAGTCT ATGCTACAAT CCCGAACTGG CGGCAGAGGT GACACTGCAG
CCCATTCGTC GCTATGGCTT TGATGCGGCT ATCCTGTTTG CCGATATTCT TCTGGTGCCA
CAGGCGCTGG GGGCAGACCT TTGGTTTGTC ACCGGCGAGG GGCCGCGCCT CTCCACGATC
ACGACAGATG CGGATTTTGC CAAGCTGGGG CCAGCCAGTG ATGTGCACGA AACCCTGAGC
CCGATTTACG AGACGGTGCG AATTCTGTCG AAAGAGCTGC CGTCGGAGAC CACCTTGATC
GGGTTTGCGG GCGCGCCATG GACGGTTGCG ACCTATATGA TCGCAGGACG TGGAACGCCG
GATCAGGGAC CGGCGCATGC CTTGATGCAG GAAAACACCC CCCTGTTCGA GGCGCTTTTG
GCACGGATTA CCGAGGCGAC CATCAGCTAT CTCTCAGCCC AGATCGAAGC TGGCGCAGAG
GTTGTGAAGA TCTTTGACAG CTGGGCGGGA TCGCTCAAGG GAGAGGCATT TGACAAATAC
GCGCTCGAGC CGGCACGTCA GATCACCGCG GCCCTGAAGG CGCGCCACCC GCATGTCCCC
GTAATCGGCT TTCCGCGCGA GGCCGGCGAG AAGTACATCG GTTTTCACGC AGCGACAGGT
GTGGATTGTG TTGCGCTCGA CAACTCCGTC GACCCGGAAT GGGCGGCGGA GCATGTGCAG
GTCGCAGGCT GCGTGCAAGG CAACCTTGCA TCGCGGCACA TGGTCAGCGG TGGAGAGGCG
CTCGTTCAGG ACACCCGCCG GATCGTCAAG GCGTTCTCGA AGGGGCCGCA TATTTTCAAC
CTCGGACATG GTATCACGCC GGATGCGGAT CCCGACAACG TGCAACGAAT GATCGATACC
GTACGCGAAG GCGCTTAG
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| Protein sequence | MGQQKTILRA LAGETQAVPP IWMMRQAGRY LPEYRATRAQ AGDFLSLCYN PELAAEVTLQ
PIRRYGFDAA ILFADILLVP QALGADLWFV TGEGPRLSTI TTDADFAKLG PASDVHETLS
PIYETVRILS KELPSETTLI GFAGAPWTVA TYMIAGRGTP DQGPAHALMQ ENTPLFEALL
ARITEATISY LSAQIEAGAE VVKIFDSWAG SLKGEAFDKY ALEPARQITA ALKARHPHVP
VIGFPREAGE KYIGFHAATG VDCVALDNSV DPEWAAEHVQ VAGCVQGNLA SRHMVSGGEA
LVQDTRRIVK AFSKGPHIFN LGHGITPDAD PDNVQRMIDT VREGA
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