| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2439 |
|---|
| Symbol | |
|---|
| ID | 4076921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2579157 |
|---|
| End bp | 2579645 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638007763 |
|---|
| Product | Hpr(Ser) kinase/phosphatase |
|---|
| Protein accession | YP_614433 |
|---|
| Protein GI | 99082279 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1493] Serine kinase of the HPr protein, regulates carbohydrate metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.35684 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTGGTCGG TCTGCCGGTC TGAGCGGGTG AATACCGCGT CGCCCGACCT CGACGTCATT
TTATTGCACG CCAGTTGCGT CGCGCTCGAT GAGCGCGGCG TTTTGCTCTG TGGCCCCTCC
GGGAGCGGTA AATCGGCGCT TGCTTTGGAA CTGATGGCAC GTGGTGCGAT CCTAGTGGCC
GACGATAAGA CCGAGGTCTT TAGGGACGGC GCGGTTTTGC GCGCGCGTGC GCCCGAAACG
ATCTCAGGCC TCATTGAGGC GCGCGGTGTG GGGCTTCTCC GCGCTGAGAC GCTGGCGCAG
GTGCGACTTT GCGTCGTGGT CGACTTGGGT CAACTTGAAA CCGACCGTCT GCCGCGCCAC
CTAAAGGAAG AGGTGTTGGG AATTTCATTG CCCAAGGTGA ACCGAATCGA CGGCGCGCAT
TTTCCGGCAG CTTTGATCCA ATATGTGAAA GGTGGAGCAC TTGACCCCGA AACAGAGCCC
AAACTCTGA
|
|---|
| Protein sequence | MWSVCRSERV NTASPDLDVI LLHASCVALD ERGVLLCGPS GSGKSALALE LMARGAILVA
DDKTEVFRDG AVLRARAPET ISGLIEARGV GLLRAETLAQ VRLCVVVDLG QLETDRLPRH
LKEEVLGISL PKVNRIDGAH FPAALIQYVK GGALDPETEP KL
|
|---|
| |