| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2423 |
|---|
| Symbol | |
|---|
| ID | 4076905 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2563205 |
|---|
| End bp | 2564347 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638007745 |
|---|
| Product | peptidase M56, BlaR1 |
|---|
| Protein accession | YP_614417 |
|---|
| Protein GI | 99082263 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG4219] Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.906062 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.563265 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCTG ATGCGCTTCT GAACTCTTAT ATCGACCTGA ACCTTCTGGT TTGTGCCGGC
GCCCTGCTGT GGCTCGCCGC GCGTTGGGTT TTGCGACGAA CGGCTCTGGC GACCGCCTAT
GGGCCGCAGC TGCGTTTGCT CAATGGGATG ACTGTCCTAC TGGCAGCCAT GCCGTTCCTT
GTTGTCGCCC TCAATGCCAT CGGTATCGGT CACCCGCCCA CCCTCTCGGA TGTCCTCGTA
TCCCAATATC TGCAAGGCAA TGTCGGCATG TCCGCAGTGC AGTTTGAATC GATGATTGGC
CTGCGCGAAG ATCTGGTCCG AGACCTTGTT TACGGCGCAA CCTTTGGGAG CCGGGTTGCC
ACTGTCTTTG TGGTGATCGG AACAGCTGTC TCGCTCTTTT TGCTGGGCTC CGCCATTCTG
CGCCTGCACC GTGCATTGGC CTCCGCCTAT CGCTGGAAGC GCATTGGCCG CGTTGATCTG
CTTTTGAGCG ACGATACCGC AGTGGCATAC TCCACCCGCG GCCTCTTTCG CCGGTATGTG
GTGTTGCCGA CGTCGCTGCT GAATGACCCG CAAGATCTGC GCCTGACGCT GGCGCATGAG
CTTCAGCATT TTCGCCAGAG GGATGTGGAA ATCGCCTTCC TGATGGAATG CCTGCGACCG
CTCCTGTTCT GGAACCCCGC CTTCTATCTT TGGCGCCGCG ACATGCGGGC GGTCCGCGAA
TATGCCTGCG ATCAGGCTCT TAGCACCAAG GGCCGCTTCG ACCCGCGCAG CTATTGCGAA
TGTTTAATCC GCGCCACCGA ACGGGCGCGC AAATCCCCTG TCTTCCTCAG CCCGCGCAGC
CCCTCTGTCG CCCTGCTTGA GCGTCGCGAA ATCTTGCATA CGCCCATGCT TGCACGCCGC
ATCATCGCGG TTACCGAGCA GCCGCCACGC GGCCGGCTCG GGCTTGTCTG GGGAGGTGTC
TCTACAGCCA TTGGCTGCGC CGTTATCGCA ACTGCCTTCC TGATCCAGCG CCCAACGGAC
TGGAGCCACG ATCGGCTGAT GCTCTCAACA GTAGTCAATC TGGAGCGCAT GGCGCAGCGC
AGTTCGAACC AGGTCGCCGG GCCGCAGTGG ACAAGCTCCA TTTTGATCCC CGCAGGTCGC
TAA
|
|---|
| Protein sequence | MKADALLNSY IDLNLLVCAG ALLWLAARWV LRRTALATAY GPQLRLLNGM TVLLAAMPFL
VVALNAIGIG HPPTLSDVLV SQYLQGNVGM SAVQFESMIG LREDLVRDLV YGATFGSRVA
TVFVVIGTAV SLFLLGSAIL RLHRALASAY RWKRIGRVDL LLSDDTAVAY STRGLFRRYV
VLPTSLLNDP QDLRLTLAHE LQHFRQRDVE IAFLMECLRP LLFWNPAFYL WRRDMRAVRE
YACDQALSTK GRFDPRSYCE CLIRATERAR KSPVFLSPRS PSVALLERRE ILHTPMLARR
IIAVTEQPPR GRLGLVWGGV STAIGCAVIA TAFLIQRPTD WSHDRLMLST VVNLERMAQR
SSNQVAGPQW TSSILIPAGR
|
|---|
| |