| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2378 |
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| Symbol | |
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| ID | 4076497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2497575 |
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| End bp | 2499782 |
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| Gene Length | 2208 bp |
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| Protein Length | 735 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638007700 |
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| Product | primosome assembly protein PriA |
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| Protein accession | YP_614372 |
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| Protein GI | 99082218 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
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| TIGRFAM ID | [TIGR00595] primosomal protein N' |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.474038 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAAAG CAGGCGATAG CCCGGAGTTT TTTGCCCAAG GCGAGCGGGT CGGGGTGCTG
ACAGCGCAGC CGCTGGATCG TCTGTTGGAC TATCGCGCGC CCGAGGGCGG CTGCTTTCTC
GGAGCCTTTG TCGAGGTGCC GCTTGGGCCG CGCAAGGTGA TCGGCGTGGT CTGGGGTCCG
GGCGCCGGTG ACTTTGATGC GGCAAAGCTG CGCTCGGTGA TCCGTGTACT GGATCTCGCA
CCGATGCGCG CCGAGATGCG CGGCTTTCTG GAGCGTGCAG GTCAGTATAC GCTCACACCG
ATGTCGATGA TGCTCCGGCT GGCAACGCGC GCACCGGGTC TGGCGGACCC GCCTTCGATG
CGCAAGATCC TGCGGCGCGG TGATCGTGAA CCTGACCGCA TCACAGACGC CCGCGCCAAG
GTGCTTGATG TGATGCAGGA ATATGAGGGC GGCGCGTTTA CCCCGTCAGA GCTTTCTGAG
CTGGCTGGCG TGACCACTTC CGTCATCAAG GGGCTGATAA AACAGGGGGC GATCCGCGAA
GAAGAAGCGC CCCGGGACCT GCCATTTCCC CCTCTTGACC CAGATCTGCC GGGCAAGACG
CTCTCTGAAG ATCAGGCCGC AGCCGCCGCC GCCCTTGAGG CCGGTGTGGA ATCTGGGCGC
TACGGTACGA CCCTTCTCAA GGGGGTGACA GGGTCGGGCA AGACCGAAGT CTACCTTGAG
GCTGTGGCGG CCTGTCTGCG CAAGGGGCGG CAAGCCTTGG TGCTTTTGCC GGAGATTGCT
CTCACTGCAG AGTTCCTGAA ACGCGTGGAG GCGCGGTTTG GGGCGGTTCC GGCCGAATGG
CACTCTGGCG TGACAATGAC CGAACGCCGC CGCGTCTGGC GCATGGTGGG GCAGGGGGCG
GCGCAACTGG TGATTGGTGC GCGTTCCTCT CTCTATCTGC CGTTCCGCGA TCTGGGGCTG
ATCATCGTCG ATGAAGAGCA CGACACGTCT TATAAACAAG AAGAAGGGGT GCTGTATAAC
GCGCGGGATC TGGCGGTCTG GCGCGCGTCC TTGTGTCAGG CGCAGGTGGT TCTTGCGTCG
GCCACCCCGA GCCTTGAAAC CTGGGCAAAC GCGGAGGCCG GGAAATACCA GCGCCTTGAT
CTGACATCGC GCTTTGGCGA CTCGGTGCTG CCGGAGATGC GCGCGATTGA TATGCGCAAT
GAGGAGCTAT TGCCCTCCAC GTGGATTTCG CCGACGCTCA AACAGGCCAT GAAACTGCGC
CTCGAACGGG GCGAACAGTC GCTTTTGTTC CTCAATCGGC GCGGCTTTGC TCCGGTGACG
ATCTGTCGGG CCTGTGGTGC GCAGGTGGCC TGCGACAATT GCGATGCGCG AATGGTCGAG
CATCGCTTCA TGAAACGCCT GATGTGCCAC CAATGTGGTG AAACCAAACC CGTGCCAACC
GAATGCCCCT CCTGCAAGGT CGAGGGCAAA ATGGCCCCCG TTGGCCCCGG TATCGAACGT
CTGGGCGAAG AAGCGGCAGC CCTCTTTCCC GAGGCGCGCA TCGCGGTGCT GAGCTCTGAT
CTCTTTGGAT CTGCACGCGC GCTCAAACAG CGGATCGAGG ATATTGCCGC AGGTGAGGCC
GACATCATTC TGGGTACGCA ATTGGTCGCG AAGGGACACA ATTTCCCCCT GCTCACGCTT
GTGGGGGTGA TCGACGCTGA TCTCGGCTTG CAAGGCTCTG ACCTGCGTGC GGCGGAGCGG
ACCTTTCAGC TCATGCGTCA GGTGGCGGGG CGCGCTGGGC GCGCTGAACG CAGGGGCGAG
GCCCTGATGC AGAGCTTTCA GCCCGAACAT CCTGTGATCC GCGCGATCCT ATCGGGCGAT
GAGGAGAGCT TCTGGCGCGC AGAGGCAGAA CAGCGACAGG CAGCGGGGGT GCCCCCCTAT
GGACGTATGG CGGGCGTGAT CCTGTCGGGG ACCGATCTAG CGCAGGTCTT TGATCTTGGC
GGGGCCTTGG CACGCAACGA TGGCCCCTTG CGGCAGGTGG GCGCGCAGCT TTTTGGTCCG
GCGCCCGCCC CGATTGCGCG CGTCAGGGGG CGGCACCGTG TGCGGCTCCT GGTGAAAGCC
GACAAAGGCG CGCCCCTTCA AGATGCGATC ACCCGCTGGA TCGCGCCATT CAAGCTCAAG
GGCGATCTGC GCCTCAATGT GGACATTGAT CCACAGAGCT TCCTTTAG
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| Protein sequence | MSKAGDSPEF FAQGERVGVL TAQPLDRLLD YRAPEGGCFL GAFVEVPLGP RKVIGVVWGP
GAGDFDAAKL RSVIRVLDLA PMRAEMRGFL ERAGQYTLTP MSMMLRLATR APGLADPPSM
RKILRRGDRE PDRITDARAK VLDVMQEYEG GAFTPSELSE LAGVTTSVIK GLIKQGAIRE
EEAPRDLPFP PLDPDLPGKT LSEDQAAAAA ALEAGVESGR YGTTLLKGVT GSGKTEVYLE
AVAACLRKGR QALVLLPEIA LTAEFLKRVE ARFGAVPAEW HSGVTMTERR RVWRMVGQGA
AQLVIGARSS LYLPFRDLGL IIVDEEHDTS YKQEEGVLYN ARDLAVWRAS LCQAQVVLAS
ATPSLETWAN AEAGKYQRLD LTSRFGDSVL PEMRAIDMRN EELLPSTWIS PTLKQAMKLR
LERGEQSLLF LNRRGFAPVT ICRACGAQVA CDNCDARMVE HRFMKRLMCH QCGETKPVPT
ECPSCKVEGK MAPVGPGIER LGEEAAALFP EARIAVLSSD LFGSARALKQ RIEDIAAGEA
DIILGTQLVA KGHNFPLLTL VGVIDADLGL QGSDLRAAER TFQLMRQVAG RAGRAERRGE
ALMQSFQPEH PVIRAILSGD EESFWRAEAE QRQAAGVPPY GRMAGVILSG TDLAQVFDLG
GALARNDGPL RQVGAQLFGP APAPIARVRG RHRVRLLVKA DKGAPLQDAI TRWIAPFKLK
GDLRLNVDID PQSFL
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