| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2353 |
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| Symbol | |
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| ID | 4076472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2474374 |
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| End bp | 2475225 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638007675 |
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| Product | tetratricopeptide region |
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| Protein accession | YP_614347 |
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| Protein GI | 99082193 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.211152 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCACA TGGGTCTATT GGCCGCAGGG CTGATTGGGG CGCTGTCCCT GACAGCGTGC
AGCAAGGAAA TTGATAAAGA AGCCGTCGAC CGCGCGCTTC AGGACGTCAA TGTCGTTGAT
GAAAGCAACC TCAACAGTGT CGTGCTCAAC AGTGCCGACC CCAATGAGGC CGTCTCGTAC
TTTCAGCGCA GTGTGAAACA GTCACCGGAT CGGATTGATC TGAACCGTGG ACTGGCAAGC
TCGCTTATTC GGGCCAAGCG CTATACCGAA GCAGCTGCCG CATGGCAGCG CGTGGTCGAT
CTGCCCGAGG CCCAAAGCGC CGACAGCGTC GAGCTCGCCG ATGCCCTCAT CCGCAACAAC
GAGTGGGATA AGGCGCGTCA GGTGCTTGAT ACCGTGCCGC CCACCCATGA GACCTTCAAA
CGCTACCGCC TCGAGGCCAT GGTCGCGGAT TCGGAACAAA ACTGGAAGGC CTCTGACAGC
TTTTACGAGA CAGCCGTGGG CCTGACGACG AAACCGGCAG GCGTGTTCAA CAACTGGGGC
TATTCCAAGC TCACCCGCGG AGACTTCAGC GGGGCCGAGC GTCTCTTTGG CGAGGCGCTG
CGTCAGGACC CAAGCCTCTT CACCGCCAAG AACAACCTCG TTCTGGCCCG CGGCGCGCAA
CGCAACTACA GCCTGCCCGT GATCGCAATG ACCCAGACCG AGCGTGCGCA GCTCTTGCAT
ACGATGGCGC TCTCTGCGGT GAAACAGGGC GATGTCAGCA CGGGTGAAGG CCTCCTGCGG
GAAGCCATCG AGACCCACCC GCAGCATTTT GATGCTGCCG CCCGCGCGCT GGAAGCGCTC
GAAAACGGCT GA
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| Protein sequence | MRHMGLLAAG LIGALSLTAC SKEIDKEAVD RALQDVNVVD ESNLNSVVLN SADPNEAVSY
FQRSVKQSPD RIDLNRGLAS SLIRAKRYTE AAAAWQRVVD LPEAQSADSV ELADALIRNN
EWDKARQVLD TVPPTHETFK RYRLEAMVAD SEQNWKASDS FYETAVGLTT KPAGVFNNWG
YSKLTRGDFS GAERLFGEAL RQDPSLFTAK NNLVLARGAQ RNYSLPVIAM TQTERAQLLH
TMALSAVKQG DVSTGEGLLR EAIETHPQHF DAAARALEAL ENG
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